<?xml version="1.0" encoding="utf-8"?>
<rss version="2.0"><channel><title>ResearchBLOG | ResearchGATE</title><link>http://blog.researchgate.net/masterblog</link><description>Featured Thoughts, News and Microarticles from the Scientific Community.</description><pubDate>Thu, 2 Sep 2010 18:58:54 UTC</pubDate><image><url>http://blog.researchgate.net/images/template/logo_blog_rss.png</url><link>http://blog.researchgate.net/</link></image><item><title><![CDATA[Using X-ray luminiscence to overcome limitations in molecular imaging ]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/3410_Using_X-ray_luminiscence_to_overcome_limitations_in_molecular_imaging]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/3410_Using_X-ray_luminiscence_to_overcome_limitations_in_molecular_imaging#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[I thought of the possibility to use X-ray luminiscences to overcome limitations in molecular imaging 2.5 years ago and did not follow it because of negative colleague opinions, time and resource constraints, and now: it works and it is published - I will learn from this mistake! ]]></description><pubDate>Mon, 16 Aug 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/3410_Using_X-ray_luminiscence_to_overcome_limitations_in_molecular_imaging]]></guid></item><item><title><![CDATA[Bridging Digital Divide in India to create equal opportunities.]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2732_Bridging_Digital_Divide_in_India_to_create_equal_opportunities]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/2732_Bridging_Digital_Divide_in_India_to_create_equal_opportunities#comments</comments><author>Vemireddy Ramachandra Reddy</author><description><![CDATA[<p>Internet, which is considered to be <i>the treasure house of knowledge</i> or<i>the information superhighway,&nbsp;</i>makes a huge difference as far as dissemination of information is concerned.
But unfortunately in India the Internet penetration is too low. The Indian population could be classified as the people who have access to internet and those who don’t have access to it. There are
many reasons to this disparity. The most important are the infrastructure bottlenecks (low bandwidth) and the economic status.&nbsp; Those who have access to this vital source of knowledge are able
to make rapid progress and grab the opportunities leaving their less fortunate brethren behind. In some developed countries, they made access to Internet a fundamental right. In US where around 75%
of the people have access to this treasure house, have set an ambitious target for themselves to provide all their citizens with high speed Internet by 2020. They think that it is one of the ways
they can maintain their technological and economic superiority. They also started taking measures to effectively counter the<i>&nbsp;cyber attacks</i>&nbsp;and protect their information networks.</p>
<p>Internet has become an essential source for&nbsp;acquiring&nbsp;knowledge. In fact it is a very fascinating thing. Take the example of a newspaper. Every morning you get a&nbsp;hard copy&nbsp;of
the newspaper delivered at your doorsteps. We&nbsp;eagerly&nbsp;grab it and start reading as it has something new to offer. Humans by nature seek new things everyday.&nbsp;Research
findings&nbsp;revealed that not more than 10% of the readers read beyond first chapter after they buy a book. So it is obvious&nbsp;that&nbsp;the remaining people, after reading some more pages or
chapters shelve it because it has become old and it no longer attracts their attention. But in case of a newspaper every morning we get a new copy and that is why we get fascinated by it. But take
Internet. It has something new to show us every&nbsp;minute&nbsp;in fact every second. So when I sit&nbsp;in front&nbsp;of my networked computer I rarely turn my eyes from it. It has got every thing
I want. I can not only access information but even share the information with others.&nbsp;</p>
<p>So to improve the educational standards in our country we need to device a plan to provide every school going child with a networked laptop. In fact there is a program called <a href=
"http://laptop.org/en/" target="_blank" rel="nofollow"><i>One Laptop per Child</i></a> started by MIT labs. This laptop is very sturdy and runs on open source LINUX based software called <i>Sugar</i>.</p>
<p>OLPC Project has made a start in India with a <a href="http://wiki.laptop.org/go/OLPC_India/DBF/Khairat_Chronicle" target="_blank" rel="nofollow">pilot deployment in a rural village at&nbsp;Khairat</a>&nbsp;near Navi Mumbai
where laptops have been deployed and every child carries one laptop home.</p>
<p>Just imagine a teacher teaching Geography&nbsp;lesson&nbsp;and the students in the classroom use <i>Google Earth</i> to locate the countries, water bodies and observe the terrain of different
locations. How effective the teaching-learning process would be!</p>
<p>Note: For full version visit &nbsp;<a href=
"http://www.teachingenglish.org.uk/blogs/eggheadedram/bridging-digital-divide-india-create-equal-opportunities" target="_blank" rel="nofollow">(http://www.teachingenglish.org.uk/blogs/eggheadedram/bridging-digital-divide-india-create-equal-opportunities)</a></p>]]></description><pubDate>Sun, 18 Jul 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2732_Bridging_Digital_Divide_in_India_to_create_equal_opportunities]]></guid></item><item><title><![CDATA[Privacy Law in Germany: Lex Street View?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2699_Privacy_Law_in_Germany_Lex_Street_View]]></link><category>News</category><comments>http://blog.researchgate.net/masterblog/2699_Privacy_Law_in_Germany_Lex_Street_View#comments</comments><author>jlussi@iri.uni-hannover.de (Dennis Jlussi)</author><description><![CDATA[<p><i>Till Steffen</i>, Senator of Justice of the City of Hamburg, tabled a motion to the Bundesrat, the German second chamber, proposing new provisions in regard to <i>Google Street View</i> and
similar services. It is Hamburg's Data Protection Officer <i>Johannes Caspar</i> that investigated for violations of German privacy law by Google Street View (and also
<i>Facebook</i>)&nbsp;recently.</p>
<p>The bill contains the following main provisions:</p>
<ul>
<li>If a photo is taken under circumvention of a visual protection, it shall not to be considered publicly available data;</li>
<li>An obligation to inform the competent authorities and the public, for anyone who wants to take photos of the public systematically, referenced to geographical data;</li>
<li>An obligation to blur faces and license plates not only for display purposes, but for the raw data;</li>
<li>A right for anyone to request to disable access to photos of his/her house.</li>
</ul>
<p>The bill would limit the "Freedom of Panorama" in German law, that allows anyone to take, publish and distribute pictures of the public. Already now, that freedom can be limited by the individual
rights of persons displayed. The bill is clearly limited to systematically geo-referenced images, and thus does not affect ordinary press photos.</p>]]></description><pubDate>Fri, 16 Jul 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2699_Privacy_Law_in_Germany_Lex_Street_View]]></guid></item><item><title><![CDATA[Biometric Issues]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2415_Biometric_Issues]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/2415_Biometric_Issues#comments</comments><author>Pawan Kumar Janbandhu</author><description><![CDATA[<p>Much has been researched on biometric based <a href="http://en.wikipedia.org/wiki/Cryptosystem" target="_blank" rel="nofollow">cryptosystems</a> in order to generate private key for cryptographic algorithms from biometrics. It
will serve two purposes</p>
<ol>
<li>we can legally bind the owner of the biometric sample with the idenfication or verification process</li>
<li>passwords need not be remembered or stored anywhere e.g. a smartcard thus avoiding the implications of password being cracked by guessing, brute force attacks or other methods.</li>
</ol>
<p>Yet there has been no single solution that will absolutely resolve key management issue for public key infrastructure, reason being biometrics do not change over a period of time. So, there is
need for better solution to generate multiple keys from the same biometrics in case there is a need for new key. Other major reason is that biometrics are not 100% accurate i.e. there is some
deviation (though small) between biometric template captured during registration and that during verification due to several reasons like noise from the camera, disorientation of the biometric sample
on the scanner, cuts and wear and tear of the biometrics during a period of time etc.&nbsp;</p>
<p>Biometric authentication takes place on the basis of percentage match with reference to a threshold. If the match is above the threshold, authentication is successful otherwise not. Hence,
accuracy of biometrics solution is measured in terms of False Acceptance Rate (FAR) and False Reject Rate (FRR). FAR and FRR&nbsp;are inversely related to each other. If one increases, the other
decreases and vica versa.</p>
<p>Since, iris is the most accurate biometrics known amongst all, it has drawn more attention in recent times from researchers around the globe in addition to fingerprint recognition technology.
Governments are planning to deploy biometrics based solution for creating database of its nationals for identification and verification using multimodel biometric technology. India's UIDIA and
USA&nbsp;government's biometric passport projects are good examples of it.</p>
<p>One of the major issues with biometrics technology is people's acceptance. People think that biometrics would open doors to breach of privacy. This perception needs to be changed.&nbsp;</p>]]></description><pubDate>Sun, 27 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2415_Biometric_Issues]]></guid></item><item><title><![CDATA[Dramatic binding of nanoparticles to plants]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2298_Dramatic_binding_of_nanoparticles_to_plants]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/2298_Dramatic_binding_of_nanoparticles_to_plants#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[A new discovery helps predict the fate of nanoparticles (NP) in environment. NP of gold (Au) bind to aquatic plant Ceratophyllum demersum so efficiently that Au content in plants increased by two orders of magnitude as compared to the background level of Au in the plants - as  a recent paper reported ]]></description><pubDate>Tue, 22 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2298_Dramatic_binding_of_nanoparticles_to_plants]]></guid></item><item><title><![CDATA[New Definition of Ecosystem]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2220_New_Definition_of_Ecosystem]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/2220_New_Definition_of_Ecosystem#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[<p>One of the most fundamental concepts of ecology is an ecosystem. The traditional definition was proposed in the 1930s. A new, modern definition is needed (<a href=
"http://insct.syr.edu/Projects/Resilience/Documents/Publications/Resilience%20Brief%206-8.pdf" target="_blank" rel="nofollow">PDF</a>).</p>
<p>The relatively recent definition that was proposed in the paper (S. A. Ostroumov, “New Definitions of the Concepts and Terms Ecosystem and Biogeocenosis” Doklady Biological Sciences, 383 (2002):
141–143. Translated from Doklady Akademii Nauk, 383, no. 4 (2002): 571–573), was often cited by other authors. The definition is:</p>
<p>An “ecosystem is the complex of interconnected living organisms inhabiting particular area or unit of space, together with their environment and all their interrelationships and relationships with
the environment. An ecosystem is characterized by the description of populations; the abundance of individual species; interspecies relationships; activity of organisms; physical and chemical
characteristics of environment; flows of matter, energy, and information; and description of changes of these parameters with time.”</p>
<p>An example of a paper that cited and used this definition, with the reference to the abovementioned article:&nbsp;</p>
<p><strong>Community Resilience: A function of resources and adaptability. (</strong><strong>WHITE PAPER</strong>)</p>
<p><strong>Patricia H. Longstaff, Nicholas J. Armstrong, Keli A. Perrin, Whitney May Parker, Matthew Hidek</strong> (JUNE 2010; INSCT.SYR.EDU)</p>
<p>Executive Summary: This white paper is intended for people who must help communities prepare for surprises. It assumes that no community can protect itself from every conceivable threat, but can
increase its ability to be resilient or ‘bounce back.’ The resilience approach described below is written in plain language and as culturally-neutral as possible in order to make it globally
applicable across a broad range of communities. We recommend that communities assess their resources and adaptive capacity for a variety of community systems: ecological, economic, civil society,
government, and infrastructure in order to find the balance that achieves the degree of resilience most appropriate for them. This approach also requires attention to the intersections and overlaps
of these systems. The ideas presented here are consistent with the most current efforts at defining and assessing resilience, even if the terminology varies. The paper concludes by outlining the next
steps for concept refinement and validation through case-based research and development of assessment tools for practitioners.</p>
<p>The full text of the paper is accessible in <a href="http://insct.syr.edu/Projects/Resilience/Documents/Publications/Resilience%20Brief%206-8.pdf" target="_blank" rel="nofollow">PDF</a>.</p>]]></description><pubDate>Thu, 17 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2220_New_Definition_of_Ecosystem]]></guid></item><item><title><![CDATA[Color CT Distinguishes Between Two Contrast Media]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2045_Color_CT_Distinguishes_Between_Two_Contrast_Media]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/2045_Color_CT_Distinguishes_Between_Two_Contrast_Media#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA["Color" CT can be used to distinguish two different contrast media: in this case iodine and barium. Unfortunately this implementation is only currently being used in non-living mice - however, very interesting to read.]]></description><pubDate>Tue, 8 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2045_Color_CT_Distinguishes_Between_Two_Contrast_Media]]></guid></item><item><title><![CDATA[Google, Google Scholar, Google Books and Science]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2065_Google_Google_Scholar_Google_Books_and_Science]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/2065_Google_Google_Scholar_Google_Books_and_Science#comments</comments><author>mnent@oeaw.ac.at (Michael Nentwich)</author><description><![CDATA[<p>The Institute of Technology Assessment (<a href="http://www.oeaw.ac.at/ita/welcome.htm" target="_blank" rel="nofollow">ITA</a>) of the Austrian Academy of Sciences just published a research report on the role of Google, Google
Scholar and Google Books for science, in the framework of the project "<a href="http://www.wissenschaftskommunikation.info/" target="_blank" rel="nofollow">Interactive Science</a>":</p>
<p>König, R., Nentwich, M., 2010, Google, Google Scholar und Google Books in der Wissenschaft. Steckbrief III im Rahmen des Projekts Interactive Science. ITA-Reports, Nr. a52-3 hrsg. v. Institut für
Technikfolgen-Abschätzung, Wien: ITA (<a href="http://epub.oeaw.ac.at/ita/ita-projektberichte/d2-2a52-3.pdf" target="_blank" rel="nofollow">PDF</a>)<a href=
"http://epub.oeaw.ac.at/ita/ita-projektberichte/d2-2a52-4.pdf" target="_blank" rel="nofollow"><br /></a></p>
<p>The 69-pages report is in German language - here is the abstract in English:</p>
<p>In this report we examine three Google services that can be used for textual searches and assess their impact on (primarily internal) scholarly communication: The universal web search engine
Google, the academic search engine Google Scholar and the book search Google Books.</p>
<p>Firstly, we present basic information about the company Google Inc. and its roots. We then introduce each service by outlining important functional principles, namely the searchable databases, the
way content is delivered and the available options for users. Starting with Google web search, we also describe some general aspects of search engines.</p>
<p>We found that all three services have effects on (internal) scholarly communication. They seem to be relevant especially with regard to searches for academic information. Since the observed
platforms follow functional principles that differ from traditional information systems (e.g. libraries), possible changes are outlined and discussed. We also focus on various other aspects of the
specific services, such as the effects of the Google web search on public relations, Google Scholar’s citation analysis functionality, or the legal problems that arise from the Google Books
project.</p>
<p>We conclude that despite the preliminary character of this assessment, which results from the dynamics in the field observed, certain aspects seem striking and almost certainly persistent. Due to
Google’s market power and popularity and the fact that it shares some goals with academics (gathering and organizing information), it will probably continue to have major effects on scholarly
communication. While some of them can be dealt with in the academic system itself, others raise fundamental questions that require a wider perspective.</p>]]></description><pubDate>Wed, 9 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2065_Google_Google_Scholar_Google_Books_and_Science]]></guid></item><item><title><![CDATA[What is the correlation between Efficiency, Effectiveness and Competitiveness?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1937_What_is_the_correlation_between_Efficiency_Effectiveness_and_Competitiveness]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/1937_What_is_the_correlation_between_Efficiency_Effectiveness_and_Competitiveness#comments</comments><author>Zithulele Balindlela</author><description><![CDATA[<p style="text-align:justify;">Economists and other people in our society use these terms everyday but we normally make a confusion in defining and expressing the correlation between them;
<i>efficient, effective and competitive.</i> Allow me to try and define these terms in economic sense because they are widely used even outside economics.&nbsp; However, my definitions are not a rule
of thumb and note that the assumption is that there are no other external influences such as subsidies, protectionism and assume <i>identical production conditions<a href=
"http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftn1" title=""><b><u>[1]</u></b></a></i>.&nbsp;</p>
<p style="text-align:justify;">When a business/producer takes fewer inputs to produce the same output as its rival is <u>efficien</u>t. Therefore, efficiency is the ratio of input costs to output,
thus it is positively related to productivity. However, productivity measures the performance of the factors of production (i.e. labour and capital). The high productivity means no wastage or misuse
of resources thus leads to high levels of production without wastage. In simply words efficiency means the use of least costs to produce the same level of output.&nbsp; This leads to low production
costs and consequently to low prices<a href="http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftn2" title=""><u>[2]</u></a>
of the final good as we know that the price of a product is equally to production costs plus <i>surplus value<a href=
"http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftn3" title=""><b><u>[3]</u></b></a>.</i><i>&nbsp;</i></p>
<p style="text-align:justify;">A producer is effective when he reaches his/her targets of production/ output. For example if a farmer targeted 10 bags of maize in a week and by Friday has 10 bags of
maize, it means the farmer is <u>effective</u>. Effectiveness does not take into account costs used to produce these bags. Therefore, being effective does not necessarily mean a farmer or company is
efficient. One (economist) may wonder that you have reached your target but at what costs, meaning how many inputs (resources) did you use to produce those 10 bags and how long did it take you to
produce one bag of maize? These questions arise because one producer may take fewer inputs and time to produce the same bags, for example may take 3 days. In such case both producers are effective
but are they efficient, that is where the issue of efficiency comes in. Based on definition of efficiency, the one who took fewer days to produce the same level of output is efficient.&nbsp;</p>
<p style="text-align:justify;">The third term is slightly difficult and challenging too. Being <u>competitive</u> means having any <i>kind</i> (excluding subsidies and protectionism) of advantage
over your competitors or rivals that leads to a large volume of sales. That advantage could be:</p>
<ul>
<li>Better location than competitors</li>
<li>Better production means</li>
<li>Low price etc&nbsp;</li>
</ul>
<p style="text-align:justify;">Therefore, there is a positive correlation between efficiency and competitiveness simply because anything that brings low cost and efficiency yields low prices which
gives you an advantage over your rivals. At the same time, I can conclude and say being effective does not mean one is competitive.&nbsp;</p>
<p style="text-align:justify;">To me all these three terms are equally important, as effectiveness allows you to reach your targets (economics does not apply here), efficiency (where economists come
in) gives economies of scale while competitiveness gives an advantage of large volume of sales and profit. Therefore, amongst other things being competitive is as a result of cost advantage resulting
from efficiency.&nbsp;</p>
<ul>
<li><a href="http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftnref1" title=""><u>[1]</u></a> An unrealistic assumption
but it does give a clear picture and I am an economist so assumptions form bases of my arguments.</li>
<li><a href="http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftnref2" title=""><u>[2]</u></a> This only happens under the
assumption of &nbsp;a perfect market competition.</li>
<li><a href="http://www.researchgate.net/javascript/fckeditor/editor/fckeditor.html?dbw=true&amp;InstanceName=htmlbody&amp;Toolbar=Basic#_ftnref3" title=""><u>[3]</u></a> Surplus value is the term
referring to profit, this term was constantly used by Carl Marx.</li>
</ul>]]></description><pubDate>Tue, 1 Jun 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1937_What_is_the_correlation_between_Efficiency_Effectiveness_and_Competitiveness]]></guid></item><item><title><![CDATA[Blood groups and growth, newer aspects]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1629_Blood_groups_and_growth_newer_aspects]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/1629_Blood_groups_and_growth_newer_aspects#comments</comments><author>Peter Arend</author><description><![CDATA[<p>Decades ago a&nbsp;fortunate experimental condition was discovered in&nbsp;the anatomy of&nbsp;the C57BL/10J&nbsp; inbred mouse, where a purely&nbsp;endogenous origin of&nbsp;"natural"
antibody&nbsp;production&nbsp;could&nbsp;be demonstrated (1, 2, 3) and growth processes already were required (2). While this was in contrast to the predominant concepts of an environmental origin,
in particular concerning the much discussed antibodies within the common ABH (blood group) antigen system (4, 5, 6, 7), the ovary of unfertilized females was clearly identified as an autologous
source of a "natural" anti-A antibody induction (1, 2, 3). &nbsp;So the&nbsp;appearance of the respective hemagglutinin and complement-dependent hemolysin, both of not yet determined protein and/or
immunoglobulin classes, was stopped by early ovariectomy, which together with the organ completely removes the A-like autoantigenic power (1).</p>
<p>The murine“natural” &nbsp;hemagglutinin and hemolysin activities, reacting&nbsp;strongly with human blood group A erythrocytes, were inhibited exclusively&nbsp;by&nbsp;autologous, water-soluble
A-specific glycosphingolipids detected in&nbsp;the&nbsp;ovary, and the respective measurements were saved at statistically significant levels&nbsp;using multiple comparisons&nbsp;with the
other&nbsp;male and&nbsp;female&nbsp;&nbsp;tissues&nbsp;(1, 8). Markedly age-dependent,&nbsp;the ovarian glycosphingolipids&nbsp;reach their&nbsp;peak of activity&nbsp;at the onset of puberty (1, 2)
and&nbsp;did not show any A-like expression&nbsp;at birth. Their production always precedes the appearance&nbsp;of their corresponding antibody, which was&nbsp;demonstrated&nbsp;at extremely low
levels, if&nbsp;at all,&nbsp;in early ovariectomized animals.&nbsp; Its autoreactive&nbsp;hemagglutinin and hemolysin specificities&nbsp;were shown to be&nbsp;distinct from a&nbsp;human&nbsp;anti-A
antibody&nbsp; which discovers growth-dependent xenoreactive A-like structures in several other murine tissues, and it is&nbsp;not a Forssman&nbsp;antibody (9).&nbsp;Moreover, there&nbsp;is no
comparable murine anti-B antibody of endogenous origin. While an anti-B can be exogenously induced in the C57BL/10J inbred mouse by the B-reactive lipopolysaccharide of Escherichia coli O86, it is
always accociated with a cross-reactive immune anti-A, which can&nbsp;easily be absorbed by the microbial glycolipid and separated from the “natural” anti-A (10).&nbsp;&nbsp;</p>
<p>Today “natural" antibodies are known to reflect&nbsp;various&nbsp;origins&nbsp;(11) and&nbsp;believed to be produced also without any exogenous stimulation, but&nbsp;nevertheless
are&nbsp;polyreactive with exogenous and endogenous structures and so are&nbsp;always (auto)-antibodies as well&nbsp;(12, 13)). Their&nbsp;appearance in healthy man and animals excludes autoimmune
diseases and&nbsp;perhaps displays self control procedures of autologous cell growth under physiological and pathological conditions (14).&nbsp;</p>
<p>The&nbsp;particular association, or even cooperation of specific&nbsp;surface receptors with&nbsp;their corresponding antibody, apparently controlled not by the thymus but peripheral mechanisms,
as demonstrated for anti-A (auto) antibodies in normal human sera (15), may raise again the intriguing question whether the genetic background, identifiable by cell surface properties, could be of
significance in disease and survival, <i>i.e</i>. evolutionary advantage. Cancer biology here is a large field of discussion, blood groups as genetic markers always played a&nbsp;role. The molecular
structures of the ABH, Lewis, Tn - and related systems in tumor development were a matter of extensive experiments. &nbsp;And the discovery&nbsp;of Tn structures and
derivatives&nbsp;as&nbsp;diagnostic markers&nbsp;and vaccines in tumor therapy and prophylaxis was one of the&nbsp;first&nbsp;important results (16).</p>
<p>But statistics about a direct&nbsp;correlation between cancer and blood groups were up to now not satisfying. While earlier&nbsp;reports&nbsp;appeared to reveal a modest predominance for malignant
growth&nbsp;in people with the expression of blood group A,&nbsp;especially concerning certain organs such as the ovary and intestinal tract, the latest prospective study could not confirm these
investigations&nbsp;considering ovarian cancer; it here demonstrated some&nbsp;predominance of of&nbsp;“B” instead of “A”&nbsp;(17).&nbsp;Moreover, in earlier studies the&nbsp;preservation of A-like
structures in the tumor cells of blood group A patients&nbsp;was shown to be&nbsp;even a favorable factor in the prognosis of&nbsp;non-small-cell cancer of the lung (18).&nbsp;</p>
<p>However, although a blood group dependency of malignant growth, especially a predominance of blood group A could up to now not be verified, A-like structures <i>per se</i> on the other hand, may
be of significance for growth processes in general, as suggested by the neo expressions of “inappropriate” A-like structures in tumors of animals not expressing blood group A in their normal
tissues&nbsp;or&nbsp;in blood &nbsp;group O persons (19, 20, 21). Although these neo expressions are relatively rare, the anti-A (auto) antibodies detected in any normal human serum (15) and the
majority of the human “natural” anti-A &nbsp;“iso” antibody populations in healthy persons could reflect a steady response to invisible “inappropriate” A-like growth.&nbsp;&nbsp;</p>
<p>In fact, A-like structures may exhibit some biological predominance as shown by their distribution in the C57BL/10J inbred female mouse. The great polymorphism of the common, species independent
(blood group) antigen A complex, a complete structure of the human ABH blood group system was presented by a single inbred organism which distinguishes between xeno- and auto-reactive A-like
activities and their related Forrsman type specificity. And the growth dependent appearance of “inappropriate” A-like activities in the ovaries of unfertilized females strongly suggest a genetic
polymorphism due to parthenogenetic processes in unfertilized eggs.&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</p>
<p>The reproductive pressure of inbreeding&nbsp;apparently promotes parthenogenesis (22). Increased developmental potentials were already observed after pharmacological or hormonal manipulations
respectively, particularly in inbred mice (23). And even viable chimaeras were already produced from normal and parthogenetic mouse embryos (24)). They perhaps also explain the observations in the
C57/BL10J female mouse, as the polymorphism of the A-like complex, exerted by the distribution of its xeno-reactive - and auto-reactive structures,&nbsp;could reflect&nbsp;the developmental process
during tissue maturation.&nbsp;</p>
<p>In man parthenogenetic potentials were recognized to be essential in stem cell research (25, 26, 27) and may be of significance in “natural” immunity as well. But they are neither restricted to
germinal tissue nor always concentrated or over-expressed as in the ovary of the C57/BL10J inbred mouse, used as experimental tool (1, 2, 8). During maturation they are preserved to some somatic
cells, which dependent from the tissue, display different amounts up to the pluripotent cells. They dictate the developmental procedures in non reproductive tissues exerting the genetic
polymorphisms, which explain the production of the “inappropriate” neoantigens such as “A”.</p>
<p>This genetically otherwise unexplainable structure was detected up to now only occasionally on malignant cells, but the blood group independent production of anti-A auto- and/or iso antibodies
(15) may consistently&nbsp;reflect the “inappropriate” A-like&nbsp;activity. &nbsp;It is so hypothesized that a polyclonal antibody production, represents the response to a common,
species-independent polymorphic endogenous structure, which by some biological predominance arises or escapes from the genetical polymorphism of developmental processes in physiolocal and
pathological conditions.&nbsp;&nbsp;</p>
<ol>
<li>Arend, P. and Nissen, J.: Immunobiology 1977, (153), 74-84.</li>
<li>Arend, P. and Nijssen, J. : Nature 1977, (269), 255-257.</li>
<li>Rocher, J.: Diplome, &nbsp;Ecole Pratiqu des Hautes Etudes (Sciences de la Vie et de la Terre), &nbsp;&nbsp;&nbsp;Nantes&nbsp;2005.&nbsp;</li>
<li>Eisler, M. : Z. Immun.-Forsch. 1930, &nbsp;(67), 38 - 49.</li>
<li>Landsteiner, K.: Science 1931, (73) 403 ff.</li>
<li>Springer, G.F.<i>et al.</i>:&nbsp;1961, J. Exp. Med. (113)), 1077-1093.</li>
<li>Springer, G. F. and Horton, R. E.: &nbsp;J. Clin. Invest. 1969 July; 48 (7): 1280–1291.&nbsp;</li>
<li>Arend, P. and Njissen, : J.: J. Immunogenetics 1976, (3), 373-382.&nbsp;</li>
<li>Arend, P.:&nbsp;Immunobiology 1979, (156), 410-417.</li>
<li>Arend, P.: Eur. J. Immunol. 1971, (5), 398-402.</li>
<li>Casali, P. and Schettino, E.W.:&nbsp;Current Topics in Microbiology and Immunology 1996 (210), 167-179.</li>
<li>Baumgarth, N. <i>et al.</i> :&nbsp;Springer Seminars in Immunopathology, Springer &nbsp;2005 (4), 347-362</li>
<li>Duk, M. <i>et al</i>.:&nbsp;Glycobiology 2005 (15), 109-118.</li>
<li>Wang, H. and Chow, D.A<i>.</i>: Immunology 2000, 101 (4), 456-467.</li>
<li>Spalter, S.:&nbsp;Blood 1999 (93), 4418-4424. &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</li>
<li>Lo-Man, R.. <i>et al.</i>: J. Immunol.2001 (166)&nbsp;2849-2854</li>
<li>Gates, M.A. <i>et al</i>.: Internatl. J. Cancer 2010,&nbsp;March 22&nbsp;.</li>
<li>Lee, J.S. <i>et al.</i>: NEJM 1991 (324)&nbsp;1084-1090.</li>
<li>Hirota, M. <i>et al</i>.: Carcinogenesis 1992 (13) 1829-1833.</li>
<li>Hakomori, S.:&nbsp;Cancer Res 1985 (45) 2405-2414</li>
<li>Okada, Y.J. <i>et al.</i> : J. Natl. Cancer Inst. 1987 78 (1), 19-28.</li>
<li>Uyenoyama, &nbsp;Marcy. K. : Evolution 1985 (39) 1194-1206.</li>
<li>Downs, S.: Biology of Reproduction 1990 (43) 427-436.</li>
<li>Leroy, C. <i>et al</i>.: Nature 1977 (269) 515- 517.</li>
<li>Isaev, D.A. <i>et al.</i> : Russian Journal of Developmental Biology 2001 <a href="http://www.springerlink.com/content/pjvbqk4evp6g/?p=119b711f2f03412aab93731e7a28c36d&amp;pi=0" target="_blank" rel="nofollow">(32)</a>
292-297</li>
<li>Kim, K.,&nbsp;<i>et al.</i>: Cell Stem Cell 2007 (1) 346-352.</li>
<li>Polak de Fried, Ester&nbsp;<i>et al.</i>: Fertility and Sterility 2008 (89)943-947&nbsp;&nbsp;</li>
</ol>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p>&nbsp;</p>]]></description><pubDate>Sat, 15 May 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1629_Blood_groups_and_growth_newer_aspects]]></guid></item><item><title><![CDATA[“Artemisinin”-  A Major Breakthrough In Malaria Chemotherapy]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1482_Artemisinin-A_Major_Breakthrough_In_Malaria_Chemotherapy]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/1482_Artemisinin-A_Major_Breakthrough_In_Malaria_Chemotherapy#comments</comments><author>subhendu.vit@gmail.com (Subhendu Chakroborty)</author><description><![CDATA[<p style="text-align:justify;"><a href="http://www.who.int/topics/malaria/en/" target="_blank" rel="nofollow">Malaria</a> is a vector borne parasitic disease caused by the genus <i>Plasmodium</i>, affecting over 100 countries of
the tropical and subtropical regions of the world.</p>
<p style="text-align:justify;">Four different <i>Plasmodium</i> species infect humans and cause distinct disease patterns:</p>
<ul>
<li><i>P. falciparum</i> (malaria tropica),</li>
<li><i>P. vivax</i> (malaria tertiana),</li>
<li><i>P. malariae</i> (malaria tertiana) and</li>
<li><i>P. ovale</i> (malaria quartana)&nbsp;</li>
</ul>
<p style="text-align:justify;"><i>P. falciparum</i> and <i>P. vivax</i> account for 95% of malaria infections. Of these two parasites, <i>P. falciparum</i> is the most deadly one, causing cerebral
malaria which, if remain untreated, leads to coma and ultimately death of the patient. 40% of the world populations live in areas with the risk of malaria.</p>
<p style="text-align:justify;">Around 300-500 million clinical cases of malaria are reported every year, of which more than a million die of severe and complicated cases of malaria. Malaria is known
to kill one child every 30 sec, 3000 children per day under the age of 5 years.</p>
<p style="text-align:justify;">Malaria ranks third among the major infectious diseases in causing deaths after pneumococcal acute respiratory infections and tuberculosis, and accounts for
approximately 2.6% of the total disease burden of the world.</p>
<p style="text-align:justify;">Although malaria has been widely eradicated in many parts of the world, the global number of cases continues to rise. The most important reason for this alarming
situation is the rapid spread of malaria parasites that are resistant to antimalarial drugs.</p>
<p style="text-align:justify;">In 1967, the Chinese government launched a program to discover new antimalarial drugs from indigenous plants. The first written record of the antipyretic activity of
tea-brewed leaves of <i>Artemisia annua</i> was described in "The Handbook of Prescriptions for Emergency Treatments" written by Ge Hong (281-340 A.D.).&nbsp; &nbsp;&nbsp;</p>
<p style="text-align:justify;">In 1971, Chinese researchers isolated, by extraction at low temperature from <i>A. annua</i> (Sweet wormwood), a stable easily crystallizable compound that they named
<i>Qinghaosu</i> and later on named <i>artemisinin</i> .&nbsp;</p>
<p><img width="230" height="150" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=1482&editor_action=getfile&editor_filename=untitled_1.JPG" alt="" /></p>
<p style="text-align:justify;">In the past 36 years, out of all antimalarial drugs discovered during this period, artemisinin was the only natural product whose medicinal properties were known for
more than 2000 years. The only one synthetic antimalarial drug, mefloquine, has been discovered during this period.</p>
<p style="text-align:justify;">Since its discovery, artemisinin has distinguished itself as a rapidly acting plasmodial agent against the blood phase of <i>P. falciparum</i>, and &nbsp;is potent
against both chloroquine-sensitive and chloroquine-resistant strains of the parasite <i>in vitro</i>,<i>in vivo</i> animal studies, and most importantly, in humans. 1,2,4-trioxane is the basic
pharmacophore responsible for antimalarial activity.&nbsp;</p>
<p>Owing to the fact that the peroxy linkage is essential for the antimalarial activity of artemisinin activity of artemisine and its derivatives, many 1,2,4-trioxane have been synthesized in
different laboratory from inexpensive and readily available starting material.&nbsp;</p>
<p><b>References</b></p>
<ul>
<li>http://malaria.who.int/</li>
<li>Qinghaosu Antimalarial Coordinating Research Group. <i>Chin. Med. J.</i> <b>1979</b>, 92, 811.</li>
<li>Meshnick, S. R.; Taylor, T. E.; Kamchonwongpaisan, S. <i>Microbiol. Re</i>v<i>.</i> <b>1996</b>, <i>60</i>, 301.&nbsp;</li>
</ul>]]></description><pubDate>Sun, 9 May 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1482_Artemisinin-A_Major_Breakthrough_In_Malaria_Chemotherapy]]></guid></item><item><title><![CDATA[What is Worldology]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1197_What_is_Worldology]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/1197_What_is_Worldology#comments</comments><author>Sina Mandalinci</author><description><![CDATA[<p>Worldology is a term I coined back in 1984 during my first year as a graduate student&nbsp;in the Department of Sociology&nbsp;at&nbsp;Princeton University. Back then there was really no pressing
need to speak of <a href="http://en.wikipedia.org/wiki/Globalization" target="_blank" rel="nofollow">globalization</a> regardless of the fact that the process was well under way. Worldology was to be the name of a newly emerging
social science discipline; it would follow the hierarchical tradition of naming disciplines based on the&nbsp;unit of measurement that they collected data upon for empirical investigation.</p>
<p>Psychology deals with and collects data at the level of the individual, Social Psychology deals with the behavior of&nbsp;individuals as they interact as groups and Sociology deals with the
investigation of human institutions, the largest of which are presently nations and religions. Worldology would deal with the newly emerging unit of the whole “world” as its unit of measurement.
&nbsp;</p>
<p>Global consciousness&nbsp;would&nbsp;be the ultimate unit of organization possible for the human race. A journey that began some 100,000 years ago with the&nbsp;possibilities born from the
evolution of the language&nbsp;organ giving us the ability to form progressively complex and increasingly encompassing social dimensions. After over a 100 millennium of ebb and flow, we stand at the
verge of the possibility of a world unite. Social systems of reciprocally predictable behavior, which began with tiny groups of isolated humans towards its ultimate capacity of the complete world,
have evolved to a point where today we stand at the threshold of our final human frontier of global consciousness.&nbsp;&nbsp; &nbsp;</p>
<p>Generation from here on in will be faced with the daunting task of human organization at a scale that was neither possible nor that can be exceeded. Worldology is conceived of as a social
scientific discipline that acts as a platform for the evaluation, investigation and facilitation of this newly emerging opportunity. An opportunity to preserve the biodiversity of our planet in all
its forms and to work together toward global awareness and a world at peace, cognizant that we all live in one ecologically whole unit. There is only one world; the boundaries that we have drawn are
mere blots of ink, meaningful only to the minds of one creature, humans. Boundaries have come and gone and they will for ever transform as we realign our allegiances and paradigms of
co-existence.&nbsp;&nbsp; &nbsp;</p>
<p>The idea of Worldology came to me after writing a final paper for my MA degree in Social Psychology at Bogazici University (Istanbul, Turkey). In the paper which was&nbsp;titled "Critical Review
of Social Psychological Theories" one of the&nbsp;dimensions that I compared various theories upon was -how universally appropriate&nbsp;the theories were. In other words, were theoretical findings
universally applicable cross culturally. I had concluded that most theorists agreed that when social psychological theories&nbsp;were reduced beyond social attribution of meaning that they lost their
usefulness, and that meaning was anchored in language. &nbsp;</p>
<p>Having grown up nearly symmetrically bicultural between&nbsp;Swissvale, a small suburb of Pittsburgh Pennsylvania, and Istanbul a megalopolis of the East, I was well aware of the impact and
importance of language and culture on perception. It dawned on me that for social psychological theories to be universally applicable that all people would need to be speaking the same language and
thus be referring to the same source of extracting meaning. &nbsp;</p>
<p>The next question was, would, at some point in time, everyone in the world speak the same language and truly understand each other, and if so how quickly would such a global reciprocity&nbsp;of
awareness develop. Back in 1984 the globalization craze was just beginning to unfold as new technologies emancipated the individual with increasingly more power. Individuals were being bombarded with
new opportunities to participate in novel situations and expand their perceptions beyond the boundaries of their own nations. The flattening of the world, to use Thomas Friedman's term, was just
beginning to compress cultures into one big playing field. &nbsp;</p>
<p>Globalization was well on its way but to speak of a global consciousness was&nbsp;still the stuff of musical imagination. The real world seemed to be launched into a spiral of polarization rather
than&nbsp;moving toward world peace. The concept of Worldology was more of a deduction from the relationship between language and behavior rather than&nbsp;an observation induced by
reality.&nbsp;&nbsp;For years it was hard to discuss the concept with anyone other than a close group of academic friends.&nbsp; But those days are past and after some 25 years, it's time to discuss
how this process will unfold and nurture the emergence of a discipline that will work on behalf of the needs of the world as one ecologically diverse whole.&nbsp;</p>]]></description><pubDate>Wed, 28 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1197_What_is_Worldology]]></guid></item><item><title><![CDATA[By the One, toward the One, being the One]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1413_By_the_One_toward_the_One_being_the_One]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/1413_By_the_One_toward_the_One_being_the_One#comments</comments><author>Katelis Viglas</author><description><![CDATA[<p>Some remarks on the Neoplatonic One, in connection with a book review of mine:&nbsp;</p>
<p>&nbsp;<a href="http://www.philosophica.gr/critica/2009-20.html" target="_blank" rel="nofollow">George Lekkas, <em>Plotinus. Towards an ontology of mode</em>, Editions Papazisi, Athens 2009, 134 pp.</a> in&nbsp;<em><a href=
"http://www.philosophica.gr/critica/" target="_blank" rel="nofollow">Critica - A Greek&nbsp;Online Journal of Philosophical Reviews</a>&nbsp;</em>(in Greek)&nbsp;&nbsp;</p>
<p>This is a&nbsp;corpus of studies, which cast new light on the interpretation of <em>Enneads</em>, striving to reveal the relations, the Neoplatonic hypostases develop in their articulation.
Particularly focusing on the mode itself as exegetical tool, examines the mode of existence or the existence of the mode. This is an original approach, introducing the existential factor of relation,
of which the inherent indeterminacy is combined with the metaphysical potentiality.&nbsp;&nbsp;</p>
<p><b>Emanation</b>&nbsp;&nbsp;</p>
<p>According to Neoplatonism the whole universe, in its material and metaphysical aspects, is a product of the first hypostasis, the One. Through the process of emanation, the hierarchy of
hypostases, One-Intelligence-Soul, ends at the non being of the region of matter. The intelligibles, being inside the hypostasis of Intelligence, form and embellish everything exists under them, of
which nothing is considered without having a part of it inside the third hypostasis, the Soul. Human bodies, as being material, are also inside the hypostasis of Soul, by their individual souls. The
river of creative and generative power of One flows into the dark region of non being, watering it. Everything is under the influence of this immense power, including matter, which is only a
privation of good.&nbsp;&nbsp;&nbsp;&nbsp;</p>
<p>The kind of relations between the hypostases guarantees the overflowing of power. Nothing exists for itself; even the Intelligence and the Soul need the dependence on the first hypostasis, the
One, as they need themselves. Since the first hypostasis stands beyond everything, beyond being, this means that nothing owes its existence to the existence itself.&nbsp;&nbsp;</p>
<p><b>Return</b>&nbsp;</p>
<p>&nbsp;But the opposite course of ascend through the hypostases is to be accomplished, which comes right after every ensouled being realizes its destiny and of what&nbsp;is made of.&nbsp;&nbsp;</p>
<p>&nbsp;The mode of Soul’s existence gives rise to the question: of what special and general characteristics is that mode, since there is always in relation to itself and to the other? The answer is
that the mode of psychic existence tends always to become intelligible, in order to find something it hasn’t. If the mode of the ensouled being presupposes the way of being intelligible, then what
means to be intelligible? The answer to this, brings to mind that the higher destination of Intelligence is to cease being in itself. The only way the Intelligence has of not being in itself, is to
succeed the complete unification with the One. Oness for some people looks very simple, and in reality it is as simple as it is the simplicity itself (πάντῃ ἁπλοῦν).</p>
<p>In fact the Soul and the Intelligence are related to the One by various ways, but always the ascending course for approaching the higher level of hypostases, is a return to the source of being,
life and reason. Nevertheless, the extremely unapproachable nature and knowledge of the One make It a resident of beyond being. In final analysis the One isn’t related to anything; they are not
humans those who find&nbsp;It,&nbsp;bud godlike and blessed&nbsp;men.&nbsp;&nbsp;</p>
<p><b>Rest</b>&nbsp;&nbsp;</p>
<p>The mode of being hasn't only a single meaning. But when we come at the One, there is no meaning other than being One,&nbsp;as&nbsp;we exist as nothing and everything, as no one and&nbsp;as
all.&nbsp;This ambiguity characterizes the&nbsp;absolute hypostasis&nbsp;not&nbsp;due to the lack&nbsp;of being, but&nbsp;due to the superabundance of being;&nbsp;its ambiguity is not common: it is a
fundamental ambiguity. In reverse, if any kind of certainty exists, this is to be found where no one can really look: at the One Itself. The contradictions and the apophatic language is only our
insufficient way to understand what the mystical union would be, when someone experiences it. In reality it is an inexpressible situation.&nbsp;&nbsp;</p>
<p>By determining and generating the Being, the One resides at the same time at the heart of everything, as the absolute otherness to Being and the complete identity to Itself. If the One tries only
a little to make everything&nbsp;similar to It, this is not why it doesn't care, but because&nbsp;everything and everybody must earn&nbsp;the kind of&nbsp;freedom which exists inside It. In any case,
the name Absolute (ἀπολλελυμένον), which fits for the One, means&nbsp;"the free", "the without bond". The final rest inside One is an achievement of freedom, because by coming to this abode means to
leave everything behind. The experience of mystical union (Unio Mystica), the ecstasy, is accomplished in this world and life as a&nbsp;flight to our real fatherland that is God or Good or
One.&nbsp;&nbsp;&nbsp;&nbsp;</p>
<p>The existence of the One everywhere, doesn't mean that Its absence&nbsp;isn't felt sometimes somewhere. If the One is the biggest attraction for everything, this is because everything yearns for
unity, beauty and goodness. The union with the One becomes the most secret and valuable hope for mankind, having take through the course of history various forms, in every field of activity. In
reality, nature and history cannot be considered and viewed otherwise, without being connected with what constantly makes them coherent, including any particularity and totality may constitute.
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</p>]]></description><pubDate>Wed, 5 May 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1413_By_the_One_toward_the_One_being_the_One]]></guid></item><item><title><![CDATA[p32 & p53, twins with different fates]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1072_p32_p53_twins_with_different_fates]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/1072_p32_p53_twins_with_different_fates#comments</comments><author>xiaodong.dang.2009@nuim.ie (Xiao-Dong Dang)</author><description><![CDATA[<p>Fogal et al (2010) found that the p32 gene (on human chromosome 17q13.3), which was overexpressed in some cancer cells, had actually promoted the level of oxidative phosphorylation (OXPHOS) in
mitochondria. The knockdown of p32 in an experiment then lead to a lower level of complexes III, IV and V composing the electron transport chain (ETC) of OXPHOS, thus making a shift in ATP synthesis
from OXPHOS to glycolysis in tumor cells, but meanwhile causing a lower level of tumor growth than before.&nbsp;</p>
<p>This is contradictory with the well known <a href="http://en.wikipedia.org/wiki/Warburg_effect" target="_blank" rel="nofollow">Warburg Effect</a> (Warburg 1924), i.e. an elevated level of glycolysis and glucose consumption as a
hallmark of tumor growth, hypothesized to provide a growth advantage for the tumor cells.<br />
<br />
However, another gene <a href="http://www.ncbi.nlm.nih.gov/disease/p53.html" target="_blank" rel="nofollow">p53</a> (on human chromosome 17p13.1), also promoting OXPHOS, is a well known tumor suppressor. p53 could inhance
expression of Cytochrome c Oxidase II (also a part of complex IV of ETC), which is essential for OXPHOS in mitochondria. p53 is found to have mutated in many cancer cells, causing a shift from OXPHOS
to glycolysis (Matoba 2006) during tumor growth. This is in turn consistent with Warburg Effect.<br />
<br />
As the result we see two genes located on the same chromosome regulating the balance between OXPHOS and glycolysis in the same way. However, they seem to play opposite roles in carcinogenesis. So why
are they so different?<br />
<br />
One possible reason may lie in their roles in inducing apoptosis. Over-expression of p32 could induce apoptosis only when p53 functions in normal status (Itahana &amp; Zhang 2008). So once p53 is
disfunctional in cancer cells as said above, the overexpression of p32 won't cause apoptosis alone, and thus won't give any disadvantage against the tumor cells. On the other hand, overexpression of
p32 could produce ATPs for tumor cells in a higher efficiency. In such a hypothesis p32 would not be an oncogene, but is only overexpressed as a consequence of carcinogenesis. And in such a case, the
Warburg Effect is not rejected but irrelevant to the mechanisms here.<br />
<br />
Anyway, the Warburg Effect has been questioned more than once (Weinhouse et al 1956; Zu &amp; Guppy 2004; Dang 2010). Although the inhibition of OXPHOS and promotion of glycolysis have been
correlated to carcinogenesis either as a cause or as a consequence in numerous studies throughout the last 80 years (too many literatures), the underlying mechanisms seem still unsolved. And it is
still possible to answer the above question in the context of metabolism regulation based on the framework raised by Warburg.<br />
<br />
Many studies have been proposing an evolutionary perspective onto the correlation between ATP synthesis and carcinogenesis (e.g. Gatenby &amp; Vincent 2003; Pfeiffer &amp; Schuster 2005; Vincent
2006), by considering the tumor/normal cells within the same tissue/organ as a population, in which individual cells compete with each other in a series of cell generations within the life span of
the human body. Such a micro-evolution process could be investigated with methods from population genetics, adaptation dynamics, theories of competition and coexistence, etc. These Darwinist have
provided interesting viewpoints and they never forgot about the important roles of mitochondrial functions and mtDNA mutations in tumor growth. However, they seldom considered the cooperation between
the mitochondrial genome and the nuclear genome, as de Bivort et al (2007) did in their effort to correlate such an coevolutionary force behind ATP synthesis with the progression of some
mitochondrial diseases.</p>
<p>It is known that many proteins and enzymes involved in mitochondrial functions, including complexes I, III, IV and V of the ETC, are composed of both mtDNA-encoded and nDNA-encoded subunits
(Wallace 2005). Interestingly, both p32 and p53 could regulate complex IV, but not complex II, which is encoded solely by nDNA. Considering that the two genomes belong to different hierarchies of
life forms, some delicate cooperation mechanisms may have evolved to keep them match in a cell. Such mechanisms could be vulnerable to novel influences in the modern world, either environmental or
physical, causing cyto-nuclear conflict. It is worth including such cyto-nuclear mismatch/incompatibility patterns when constructing an evolutionary model to answer the above question.</p>
<p><strong>Vital references</strong></p>
<ul>
<li>Fogal, V., Richardson, A. D., Karmali, P. P., Scheffler, I. E., Smith, J. W., &amp; Ruoslahti, E. 2010. Mitochondrial p32 protein is a critical regulator of tumor metabolism via maintenance of
oxidative phosphorylation. Molecular and Cellular Biology 30: 1303-1318.</li>
<li>Matoba, S., Kang, J., Patino, W. D., Wragg, A., Boehm, M., Gavrilova, O., Hurley, P. J., Bunz, F., &amp; Hwang, P. M. 2006. p53 regulates mitochondrial respiration. Science 312: 1650-1653.</li>
<li>de Bivort, B. L., Chen, C., Perretti, F., Negro, G., Philip, T. M., &amp; Bar-Yam, Y. 2007. Metabolic implications for the mechanism of mitochondrial endosymbiosis and human hereditary disorders.
Journal of Theoretical Biology 248: 26-36.</li>
</ul>]]></description><pubDate>Sat, 24 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1072_p32_p53_twins_with_different_fates]]></guid></item><item><title><![CDATA[Composition of Carotid Atherosclerotic Plaque Is Associated With Cardiovascular Outcome. A Prognostic Study]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1092_Composition_of_Carotid_Atherosclerotic_Plaque_Is_Associated_With_Cardiovascular_Outcome_A_Prognostic_Study]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/1092_Composition_of_Carotid_Atherosclerotic_Plaque_Is_Associated_With_Cardiovascular_Outcome_A_Prognostic_Study#comments</comments><author>schoenp1@ccf.org (Paul Schoenhagen)</author><description><![CDATA[I've recently come across this interesting article.]]></description><pubDate>Sun, 25 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1092_Composition_of_Carotid_Atherosclerotic_Plaque_Is_Associated_With_Cardiovascular_Outcome_A_Prognostic_Study]]></guid></item><item><title><![CDATA[MicroRNA, trinucleotide repeats, and the genetics of general cognitive ability (IQ)]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/830_MicroRNA_trinucleotide_repeats_and_the_genetics_of_general_cognitive_ability_IQ]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/830_MicroRNA_trinucleotide_repeats_and_the_genetics_of_general_cognitive_ability_IQ#comments</comments><author>Volkmar Weiss</author><description><![CDATA[<p style="text-align:justify;">A full understanding of the genetics of schizophrenia, autism, dyslexia, attention deficit hyperactivity disorder (ADHD), alzheimer and a large number of
neurodegenerative diseases seems to be impossible without reckoning with IQ as a major confounding variable. Nobody will obtain clearcut results in the genetics of neurodegenerative diseases as long
as the genetic background of general intelligence remains unknown. Despite this in many samples IQ variation is not controlled by collecting data on years of education and social status of probands
which provide good surrogates of IQ estimates, at least in industrialized countries.</p>
<p style="text-align:justify;">Until now, more than 1 million of SNPs have already been investigated for an association with IQ by <a href="http://www.ncbi.nlm.nih.gov/pubmed/18067574" target="_blank" rel="nofollow">Plomin</a>,
<a href="http://www.ncbi.nlm.nih.gov/pubmed/17601350" target="_blank" rel="nofollow">Deary</a> et al. and others. No major effect has been discovered which could explain the high <a href=
"http://www.ncbi.nlm.nih.gov/pubmed/20036436" target="_blank" rel="nofollow">heritability</a> of general cognitive ability and the known pattern of Mendelian segregation of IQ in the normal range of variation. Plomin et al. found
only very small and mostly non-replicable effects. Therefore, our mind should be open for a broader outlook and new hypotheses.&nbsp;</p>
<p>MicroRNAs as <a href="http://www.ncbi.nlm.nih.gov/pubmed/18541114" target="_blank" rel="nofollow">regulatory factors in gene expression</a> renders them attractive candidates for harbouring genetic variants with effects on IQ.
There is already ample evidence that miRNA-mediated gene regulation <a href="http://www.ncbi.nlm.nih.gov/pubmed/20380818b" target="_blank" rel="nofollow">plays an important role</a> in a number of neurodegenerative diseases.
MiRNAs bind to complementary sequences in the <a href="http://en.wikipedia.org/wiki/Three_prime_untranslated_region" title="Three prime untranslated region" target="_blank" rel="nofollow"><u>three prime untranslated
regions</u></a> (3' UTRs) of target messenger RNA transcripts. MiRNA genes are found in intergenic regions or in anti-sense orientation to genes and contain their own miRNA gene promoter and
regulatory units. As much as 40% of miRNA genes may lie in the near-gene introns of protein and non-protein coding genes or even in exons.&nbsp;</p>
<p>&nbsp;</p>
<p><strong>Our first example:</strong></p>
<p style="text-align:justify;"><a href="http://www.ncbi.nlm.nih.gov/pubmed/19734902" target="_blank" rel="nofollow">Harold, D. et al.</a> have found out and replicated compelling evidence that rs3851179 of the PICALM gene is
associated with alzheimer. The homozygotes and heterozygotes of the rare allele A of rs3851179 have a 0,86x decreased risk for alzheimer. Since many years I am looking for such findings, because we
should expect that probands of high general intelligence (high IQ) have a later onset of alzheimer and a decreased risk. Surprisingly, the allele frequencies not only of rs3851179, but even more of
rs669556 and of at least 30 other SNPs in this near gene region exhibit the frequencies of a hypothetical major gene locus of general intelligence, see <a href=
"http://www.v-weiss.de/majgenes.html" target="_blank" rel="nofollow"><u>http://www.v-weiss.de/majgenes.html</u></a> and <a href=
"http://knol.google.com/k/national-iq-means" target="_blank" rel="nofollow"><u>http://knol.google.com/k/national-iq-means</u></a>.<br />
<br />
As it seems, at the moment, nobody has an explanation why the non-coding SNP rs3851179 is associated with Alzheimer and why in a large chunk of DNA with copy number variation a high number of SNPs
exhibits similar allele frequencies in all the populations of the HapMap project. In which way could such a phenomenon have been stabilized by natural selection? Could this region be coding for miRNA
or be its binding target?</p>
<p style="text-align:justify;">&nbsp;</p>
<p style="text-align:justify;"><strong>The second example:</strong></p>
<p style="text-align:justify;">By checking routinely the bibliographical details of paper published together with A. Payton et al. on "<a href=
"http://www.ncbi.nlm.nih.gov/pubmed/18538895" target="_blank" rel="nofollow">Investigation of a functional quinine oxireductase (NQO2) polymorphism and cognitive decline</a>" in&nbsp; Neurobiol. Aging 31 (2010) 351, I became aware
of a publication on "G<a href="http://www.ncbi.nlm.nih.gov/pubmed/19195803" target="_blank" rel="nofollow">enetic variant of glutathione peroxidase 1 in autism</a>" Brain Dev. 32 (2010) 105.</p>
<p style="text-align:justify;">Since 1982 I did collect evidence on a relationship between glutathione peroxidase activity, general cognitive ability (IQ) and social status. I quote in the following
from an editorial published by me 1994 in <a href="http://www.v-weiss.de/intellig.html" target="_blank" rel="nofollow">the journal "Intelligence"</a>:</p>
<p style="text-align:justify;"><br />
"In 1982 I became aware of a paper published by Sinet, Lejeune &amp; Jerome (1979) in which a correlation of .58 between IQ and erythrocyte glutathione peroxidase activity (GSHPx, now GPX1) was
reported for 50 trisomy 21 patients. None of the other enzymes studied correlated with IQ.&nbsp;Sinet et al. thought the correlation to be trisomy-specific, because an increase of about 50% in the
superoxide dismutase activity (SOD-1) can&nbsp;be observed in cells from trisomy 21 patients. There is a feedback control of GSHPx concentration by the amount of superoxide, which explains the
elevated activity of GSHPx in cells of trisomy 21 patients. However, Fraser and Sadovnick (1976) had found that the&nbsp;correlations of IQ between trisomy 21 probands with their
fathers,&nbsp;mothers and sibs are about .50, consequently of the same size as with healthy&nbsp; children despite the mean IQ of trisomy 21 probands being about 70 points lower. Therefore already
Lenz (1978) had concluded that individual differences in trisomy-IQ have generally the same biochemical background as in normal persons. And Brugge et al. (1992) confirmed a correlation of .73
between erythrocyte GSHPxactivity anda short-term memory score. ... &nbsp;By Gerli et al. (1984) GSHPx was assayed in families and the results support the&nbsp;existence of two Mendelian
alleles.”&nbsp;</p>
<p style="text-align:justify;"><br />
In the following years I instigated a number of colleagues from all over the world to discover the underlying genetic cause of the cited correlations, but nearly completely in vain. We investigated
SNPs of GST transferases, NQO and many, many others. Therefore I came to the conclusion that the major contribution to the correlation between lipid peroxidation and IQ could or should be
the&nbsp;effect of a gene with copy number variations and repeat polymorphisms for&nbsp;which data are still not available or incomplete.<br />
&nbsp;</p>
<p style="text-align:justify;">In April 2010, at the present state of knowledge, GPX1 is such a gene for which at least 4 <a href=
"http://www.genecards.org/cgi-bin/carddisp.pl?gene=GPX1&amp;search=GPX1&amp;rf=/home/genecards/current/website/carddisp.pl&amp;snp=23#snp" target="_blank" rel="nofollow">common frameshift polymorphisms are already known</a>. The
arguments in favor of a relationship between trinucleotide repeat polymorphisms of GPX1 and general cognitive ability are holding for <a href=
"http://www.genecards.org/cgi-bin/carddisp.pl?gene=GCLC&amp;search=GCLC" target="_blank" rel="nofollow">GCLC</a> and its repeat polymorphisms, too.&nbsp; Glutamate-cysteine ligase (GCL) is the rate limiting enzyme in glutathione
synthesis. GCLC repeat polymorphisms are located in the 3' UTR and 5’UTR regions and therefore a likely binding target of miRNA. In view of the claimed relationship of GSH/GSSG redox status with
schizophrenia and other neurodegenerative diseases, we should be eager to see whether a correlation between GCLC and its trinucleotide repeats and IQ can be confirmed or not. For the GLCL GAG-repeat
status <a href="http://www.ncbi.nlm.nih.gov/pubmed/18549827" target="_blank" rel="nofollow">ethnic differences of allele frequencies are known</a>.</p>
<p style="text-align:justify;">As I see, new publications and reviews on the relationship between glutathione status and brain function are not aware of some older publications. In the appendix
„Memory as a Macroscopic Ordered State by Entrainment and Resonance in Energy Pathways”, pp. 201-221, of the monograph “Psychogenetik der Intelligenz”. Dortmund. Verlag Modernes Lernen 1986, I wrote
on p. 210ff:</p>
<p style="text-align:justify;">“It would defy the most fundamental laws of thermodynamics, when individual differences in brain power would not find their counterpart in individual differences of
brain energy metabolism. … Reactions involving S-S or S-H groups of proteins may readily account for the apparently opposite effects of the same control mechanism.&nbsp; … . At this point we direct
attention to the correlation (.58) between IQ and glutathione peroxidase (GSHPx, now GPX) activity (SINET et. 1979) … In modulating the GSH/GSSG ratio, GSHPx not only contributes to the regulation of
glycolysis (GILBERT 1984) but consequently also the adenylate energy charge (REHNCRONA et al. 1980) and the NADP/NADPH ratio (GRIMM 1978) are prefectly correlated (r = 1.00!) with glutathione status.
Thus the fundamental chemical needs of a living cell, high-energy phosphate stores (ATP) and reducing power (NADPH) depend upon the cortical concentration of glutathione, and the dynamic behavior of
a complex system can be reduced to the molecular properties of a master enzyme in an energy pathway.”</p>
<p style="text-align:justify;">The combination of autozygosity mapping and microarray RNA expression analysis has led to the discovery of new genetic polymorphisms underlying nonsyndromic mental
retardation with autosomal-recessive inheritance, see <a href="http://www.medicalnewstoday.com/articles/174204.php" target="_blank" rel="nofollow">Medical News Today</a> and <a href=
"http://www.cell.com/AJHG/abstract/S0002-9297(09)00522-9" target="_blank" rel="nofollow">Cell</a>. &nbsp;</p>
<p style="text-align:justify;">&nbsp;</p>
<p style="text-align:justify;"><strong>Conclusion</strong></p>
<p style="text-align:justify;"><br />
We can be convinced that the application of similar methods to consanguineous families with several members in the high IQ range will lead to the discovery of gene polymorphisms underlying
variability of IQ in the upper and normal range of the distribution.&nbsp; Sites where miRNA are coded or binding and those are especially regions with trinucleotid repeats in the UTRs as in the case
of GCLC should be investigated as soon as possible. Until now, <a href="http://www.ncbi.nlm.nih.gov/pubmed/18508523" target="_blank" rel="nofollow">all known cases</a> of a causal relationship between copy number variation of
trinucleotid repeats and disease have been neurodegenerative diseases and are associated with different degrees of&nbsp; mental retardation . Therefore the idea, that also the hitherto unknown
genetic variation underlying the normal range of IQ could have similar causes (see <a href="http://www.ncbi.nlm.nih.gov/pubmed/20298200" target="_blank" rel="nofollow">Tam et al</a>,&nbsp; <a href=
"http://www.ncbi.nlm.nih.gov/pubmed/20226177" target="_blank" rel="nofollow">Anthony et al</a>, and <a href="http://www.ncbi.nlm.nih.gov/pubmed/19707536" target="_blank" rel="nofollow">Barbato et al</a>) , seems not be far fetched.</p>]]></description><pubDate>Fri, 16 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/830_MicroRNA_trinucleotide_repeats_and_the_genetics_of_general_cognitive_ability_IQ]]></guid></item><item><title><![CDATA[Dennis Quaid and Medical Errors]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/798_Dennis_Quaid_and_Medical_Errors]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/798_Dennis_Quaid_and_Medical_Errors#comments</comments><author>James Douglas Orton</author><description><![CDATA[<p>On the drive to work today I listened to an interview on CSPAN's Washington Journal with a doctor based in Texas and actor Dennis Quaid.&nbsp; Nearly a year ago, Quaid and his wife Kimberly were
in the room when their newborn <a href="http://www.reuters.com/article/idUSN2118636920071123" target="_blank" rel="nofollow">twins were given a dose of heparin</a> that was 1,000 times the appropriate dose.&nbsp; At 1:00 today
Quaid and the doctor were to speak here in Washington at the National Press Club, in order to call attention to the release of a 500-page report on accumulated best practices in the avoidance of
catastrophes.&nbsp; A few themes that should be very familiar to HRO&nbsp;researchers:</p>
<ol>
<li>It's not bad people, it's bad systems.&nbsp; Quaid and the doctor were very good at praising performers within the systems and emphasizing that the 98,000 deaths per year identified by the
Institute on Medical Organizations report from 1999 were a product of flawed systems, not evil people.</li>
<li>There are cross-industry lessons to be learned.&nbsp; Quaid and the doctor referred several times to the fact that their friendship and their work was accelerated by the fact that they are both
pilots.&nbsp; They called for a National Transportation Safety Board for medicine. They noted that the nurses' "Five Rights" -- right patient, right prescription, right dosage, right time, and right
method -- was a low-cost and helpful checklist that can reduce errors.&nbsp; I&nbsp;kept waiting for them to recognize Chris Hart's "near-miss" data set as one of the things that could be transferred
between industry contexts, but didn't hear that mentioned.</li>
<li>Awareness is important. They talked frequently about how little people care about medical errors until it affects them directly, and Quaid's twins' experience -- and his celebrity -- put "wind in
the sails" of the project.&nbsp; I suppose that Katie Couric will be talking about Quaid's project in a couple of hours on the evening news, and USA&nbsp;Today might have an article on the event
tomorrow morning -- and it's a little sad that the American public has the attention span of a baby monkey -- but perhaps we can learn to leverage celebrity in the service of high-reliability better
than we have in the past.</li>
</ol>
<p>If I&nbsp;ever get an intern to help me with this blog, this would be a good place to put a link to the <a href=
"http://www.c-span.org/Watch/Media/2010/04/12/HP/A/31715/NPC+Luncheon+Address+by+Dennis+Quaid+on+Patient+Safety.aspx" target="_blank" rel="nofollow">CSPAN video on Washington Journal on April 12, 2010</a>, this would be a good
place to put a link to the National Press Club event on April 12, 2010; and this would be a good place to put a link to media coverage of the event.&nbsp; Quick core dump on HRO&nbsp;and medical
error:</p>
<ol>
<li>Kathie Sutcliffe co-edited a book with the title Medical Error several years' ago.</li>
<li>George Washington University doctoral student Kip Rollins is finishing a strong dissertation on team-based cardio surgical teams and the structuring actitivities that take place in them.</li>
<li>I'm a huge fan, recently, of a Katherine Klein et al. article in Administrative Science Quarterly on Trauma Resuscitation Units and the process of "dynamic delegation."&nbsp;</li>
<li>And Amy Edmondson's research on cardio surgical teams learning to collaborate even more tightly than before due to a new surgical procedure is very impressive at driving home the importance of
"psychological safety" in team cultures.</li>
<li>Finally, for now, Jenny Rudolph's dissertation data on anaesthesiology residents' leadership of teams in response to a complex 25-minute simulation convinces me that individuals do not have the
cognitive bandwidth to solve wickedly complex problems, and teams can be built to be smart enough to accomplish those tasks.</li>
</ol>
<p>&nbsp;</p>]]></description><pubDate>Mon, 12 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/798_Dennis_Quaid_and_Medical_Errors]]></guid></item><item><title><![CDATA[What is the diagnosis?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/808_What_is_the_diagnosis]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/808_What_is_the_diagnosis#comments</comments><author>Himadri Das</author><description><![CDATA[<p>Please feel free to leave a comment if you know the diagnosis.</p>
<p>&nbsp;</p>
<p><img width="300" height="300" alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=808&editor_action=getfile&editor_filename=AAD%2Bwith%2Bcord%2Bchange.BMP" /></p>
<p><img width="300" height="300" alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=808&editor_action=getfile&editor_filename=AAD%2Bwith%2Bcord%2Bchange.2.BMP" /></p>
<p>&nbsp;</p>]]></description><pubDate>Wed, 14 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/808_What_is_the_diagnosis]]></guid></item><item><title><![CDATA[Institutional e-mails under papers - still good state of the art? ]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/804_Institutional_e-mails_under_papers-still_good_state_of_the_art]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/804_Institutional_e-mails_under_papers-still_good_state_of_the_art#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Most researchers still use institutional e-mails in papers, abstracts or presentations. I don't think this is appropriate, especially with today's researcher's mobility and not-forwarding institute admins. Supporting institution is clearly provided by the affiliation.]]></description><pubDate>Tue, 13 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/804_Institutional_e-mails_under_papers-still_good_state_of_the_art]]></guid></item><item><title><![CDATA[Conference: Ecosystems, Organisms, Innovations]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/745_Conference_Ecosystems_Organisms_Innovations]]></link><category>Conferences</category><comments>http://blog.researchgate.net/masterblog/745_Conference_Ecosystems_Organisms_Innovations#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[<p>On June 23-24, 2010, an international conference with the title ‘Ecosystems, Organisms, Innovations – 12’&nbsp; will take place in Moscow, Russian Federation. The conference is hosted by Moscow
State University together with several other national and international organizations and institutions, including the Moscow Chapter of Eco-Ethics International Union, Environmental Leadership
Institution, and others. An excerpt from the conference website:</p>
<p>“What is unique about the conference and make it an attractive option to submit your work:</p>
<ul>
<li>the registration/publication fee is very reasonable;</li>
<li>a distant participation is possible, no need to attend in person;</li>
<li>the proceedings are published as a series that is included&nbsp; in the international Ulrich’s databases of reviewed serial editions; the reference to the proceedings has a format of a reviewed
journal;</li>
<li>the event is widely covered by mass media…"</li>
</ul>
<p>This is the 12th of the series of International Poster Session Conferences started in 1999.&nbsp; Abstracts of the conferences are published.</p>
<p><strong>SCIENCE DISCIPLINES</strong>: Biological Sciences, Environmental Sciences, Earth Sciences, Geography Science, Chemical Science, Agricultural Science, Biotechnology, Education, Other.</p>
<p><strong>ORGANIZERS</strong>: Independent organizing committee, including scientists and representatives of Moscow State University, Russian Academy of Sciences (RAS), Hydrobiological Society
(associated with RAS), SIL, EcoEthics International Union (EEIU), and other national and international scientific organizations; the permanent organizing committee started in 1999, and organized 11
conferences of this series.</p>
<p><strong>DEADLINES</strong>: May 11, 2010 for&nbsp; registration fees; May 20 (17:00 Moscow time), 2010&nbsp; for the abstracts (by e-mail), &nbsp;June 2 for posters (by paper mail). We also accept
the materials and the fee after the deadline, but in that case the registration fee increases for all categories of participants. Sending preliminary information on your intention to submit an
abstract/poster is strongly encouraged.</p>
<p><strong>DETAILS</strong>: No personal attendance is needed. The posters sent by mail will be displayed/exhibited by organizers on behalf of the authors. Non-attendees can receive some feedback
from other participants by e-mail. The best posters presented by students (including those sent by mail) will receive honorary diplomas.</p>
<p><strong>PUBLICATION OF PROCEEDINGS</strong>: in the next volume&nbsp; (No. 16) of the serial ‘Ecological Studies, Hazards, Solutions’, which is included in the authoritative international Ulrich’s
databases of reviewed serial editions; the reference to your work will have the format: J. Smith. Discovery of a new phenomenon in biology and environmental science. -&nbsp; Ecological Studies,
Hazards, Solutions, 2010, vol. 16, p. 21.</p>
<p><strong>COVERAGE OF THE CONFERENCE BY MASS MEDIA</strong>. The conference is regularly covered by several editions, including journals and newspapers. <a href=
"https://www.researchgate.net/profile/Sergei_Ostroumov/blog/701_How_the_series_of_conferences_Ecosystems_Organisms_Innovations_was_covered_by_mass_media">Some examples</a>.</p>
<p>Also, we invite nominations for candidates to receive the honorary titles of Aquatic Ecologist of the Year and Ecologist of the Year, with your rationale for your nomination. The process of
nomination and selection of the finalists will be finished at the conference.</p>
<p>More information is available <a href=
"https://www.researchgate.net/profile/Sergei_Ostroumov/blog/700_Call_for_Abstracts_International_Conference_Ecosystems_Organisms_Innovations-12_2010">here</a>.&nbsp;</p>]]></description><pubDate>Mon, 5 Apr 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/745_Conference_Ecosystems_Organisms_Innovations]]></guid></item><item><title><![CDATA[Low-level of radiation - is it known that CT is harmful? ]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/687_Low-level_of_radiation-is_it_known_that_CT_is_harmful]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/687_Low-level_of_radiation-is_it_known_that_CT_is_harmful#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Just a reminder: In hard sciences it is an assumption, BUT it is actually not known that low level of radiation (e.g. as experienced during CT scans (<100 mSv)) is harmful or can cause cancer. Probably it does not. Still, we should avoid radiation whenever possible! ]]></description><pubDate>Wed, 24 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/687_Low-level_of_radiation-is_it_known_that_CT_is_harmful]]></guid></item><item><title><![CDATA[Entropy decrease?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/644_Entropy_decrease]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/644_Entropy_decrease#comments</comments><author>Imants Vilks</author><description><![CDATA[<p>Robert M.Wald in <a href=
"http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B6VH6-4JYKMV7-1&amp;_user=10&amp;_coverDate=09%2F30%2F2006&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_sort=d&amp;_docanchor=&amp;view=c&amp;_searchStrId=1254241120&amp;_rerunOrigin=google&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=cbec2df9659df17118794889d8be4b95" target="_blank" rel="nofollow">
<i>The</i> <i>Arrow of Time and the Initial Conditions of the Universe</i></a> (Enrico Fermi Institute and Department of Physics University of Chicago, arXiv:gr-qc/050709 vl 21 Jul 2005) writes:</p>
<p>“There is no question that our present universe displays a thermodynamic arrow of time: We all have observed phenomena in our everyday lives where entropy is seen to increase significantly, but no
one has ever reliably reported an observation of entropy decrease in a macroscopic system.”</p>
<p>We can have a different approach. After the Big Bang all visible matter undergoes temperature decrease and its entropy is changing due to dS=dQ/T=mcdT/T, where m - mass, c - the heat capacity.
After&nbsp;integrating we get the entropy change&nbsp; ΔS=mc lnT/T0, where T0 – the temperature at which all molecules of matter have zero kinetic energy.</p>
<p>Besides we have step-by-step entropy decreases due to phase changes: radiation – atoms – molecules – gas – liquid – solid.</p>
<p>Some say that after the heat deaf the entropy of the Universe is maximal. It depends on approach, depends on POV, or on distribution we look at. At heat deaf the atoms and molecules are
maintained, so is the information originated at their formation. Robert Ayres in his book “<i>Information,</i> <i>Entropy</i> <i>and Progress”</i> &nbsp;names it the ‘morphological information’.</p>
<p>The Second Law was formulated by observations on Earth: by all physical processes where labor or heat is exchanged entropy increases. For example, Earth radiates the heat dQ into the environment.
Earth’s entropy change dS=–dQ/300 (when heat is received, it is designated by +dQ, when heat is given away, it is designated by –dQ), environment receives the radiated heat, its entropy changes dS=
+dQ/2,7. The system’s ‘Earth-environment’ total entropy changes dS =dQ/2,7–dQ/300 is positive.</p>
<p>What is ‘the environment’? Vacuum + photons (I don’t discuss dark matter). On a cosmic scale all the photons emitted by stars get redshifted due to expansion of the Universe. Does their entropy
get decreased too?</p>
<p>It seems that we are not forced always to say that there is a global increase of entropy due to the Second Law. It seems that we can reliably report “an observation of entropy decrease in a
macroscopic system.”&nbsp;&nbsp;&nbsp;</p>]]></description><pubDate>Tue, 16 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/644_Entropy_decrease]]></guid></item><item><title><![CDATA[Vital role of aquatic organisms in improving water quality]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/619_Vital_role_of_aquatic_organisms_in_improving_water_quality]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/619_Vital_role_of_aquatic_organisms_in_improving_water_quality#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[The key paper analyzed how filter-feeders (molluscs and others) remove cells of phytoplankton and bacteria from water. This plays a gigantic role in making water clear, and ecosystem stable. Author discovered that pollutants slow down this vital activity of filter-feeders, with dramatic consequences.]]></description><pubDate>Thu, 11 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/619_Vital_role_of_aquatic_organisms_in_improving_water_quality]]></guid></item><item><title><![CDATA[“Quality not Quantity” – German Research Foundation Adopts Rules to Counter the Flood of Publications in Research]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/618_Quality_not_Quantity_German_Research_Foundation_Adopts_Rules_to_Counter_the_Flood_of_Publications_in_Research]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/618_Quality_not_Quantity_German_Research_Foundation_Adopts_Rules_to_Counter_the_Flood_of_Publications_in_Research#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[DFG counteracts tendency to prefer number of publications over quality of research! Great step of the DFG - Let us hope that this is the start of a policy change! ]]></description><pubDate>Wed, 10 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/618_Quality_not_Quantity_German_Research_Foundation_Adopts_Rules_to_Counter_the_Flood_of_Publications_in_Research]]></guid></item><item><title><![CDATA[Individuality and the physical paradigm]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/604_Individuality_and_the_physical_paradigm]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/604_Individuality_and_the_physical_paradigm#comments</comments><author>Claus Janew</author><description><![CDATA[<p><strong>This blog entry relates to the paper <a href="https://www.researchgate.net/file.FileLoader.html?key=4ef6b411409a2b15319d52d06425d89c">Dynamic Existence</a>.</strong></p>
<p>The physical paradigm contains serious distortions or inconsistencies:</p>
<ol>
<li>The Brain is seen as the ultimate "perceiver". But who perceives the brain? The brain again? This is a circle, where my concept of circumscription comes in.</li>
<li>Reality is seen as physical after all, and by "physical" our paradigm is meant. From this a limited view of information derives. Here, my infinitesimality structure suggests a deeper view from
which "information" derives.</li>
<li>"Physical" also means "objective", and objectivity is considered to be "not part of the observer" (the term "observer" contains this misunderstanding in itself). So where in this world is the
observer? Observed by whom? Or not observed at all?</li>
</ol>
<p>Infinitesimality structure means, that there is no object in itself. Objects only condense from universal change by circumscription. This change is an alternation between individuals, and these
individuals are condensations of this change, too. So neither firm objects nor objective individuals exist. There is only change or alternation in itself (structure of alternation).</p>
<p>Quantum physics describes another form of alternation than classical physics. There seems to be a basic unity, an elementary quantum. To perceive (or think) such a quantum, however, needs
circumscription of "it", condensation of a movement. Again, there is no quantum in itself, although we treat it as such – and limit our focus on it.</p>
<p>How than can it be circumscribed so stable? This is the question to be asked, while not simplifying it to an object in itself (except for practical use).</p>
<p>In this concept there is no exclusive observer, there are only individual views (= individuals). Every view is unlimited at the end (and so are the individuals), but is limited asymptotically by
self-reflection aimed at a controllable world and at building structures at all. (A continuous plenum reflects on limited structure to define itself.)</p>
<p>To view the world infinitesimality-structured means to think beyond elementary quantum and quantum information, because "information" is already a condensation, a permanent attuning of alternating
individuals (individual views). No information is transmitted: An attunement takes place – by condensating a change, changing position, and decondensating individually. The whole process is
precondensated before of course by developing a "common" language, establishing a "common" infrastructure etc., and by unknown processes, too.</p>
<p>Alternation is unlimited, because logically there cannot be a limit without the possibility to cross it in principle. I know that logic is thought by humans, but on the other hand thinking is seen
as an appropriate tool to relate to the bigger world. It must be so, otherwise we would not (self-) exist in it. Although our thinking may be inconsistent, it cannot be meaningless to the bigger
extent. Although the "ultimate" observer does not exist, individual standpoints do exist; and so does their attunement.</p>
<p>Infinitesimality and infinity are consequences of limitlessness with respect to the existent meaning of the individual thinking. They can be well a camouflage for unperceived structures, but they
always point beyond the perceived ones and they always remain essential values to deal with.</p>]]></description><pubDate>Fri, 5 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/604_Individuality_and_the_physical_paradigm]]></guid></item><item><title><![CDATA[New unified theory of the ecological mechanisms to improve water quality and to make water clear: a basis for water purification and waste water treatment]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/610_New_unified_theory_of_the_ecological_mechanisms_to_improve_water_quality_and_to_make_water_clear_a_basis_for_water_purification_and_waste_water_treatment]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/610_New_unified_theory_of_the_ecological_mechanisms_to_improve_water_quality_and_to_make_water_clear_a_basis_for_water_purification_and_waste_water_treatment#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[A challenge in ecology is the multitude of factors that influence all ecological processes. It is difficult to find a balance when we analyze them. A new theory was created that unified and balanced many physical, chemical and biological factors that work together toward improving water quality.]]></description><pubDate>Mon, 8 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/610_New_unified_theory_of_the_ecological_mechanisms_to_improve_water_quality_and_to_make_water_clear_a_basis_for_water_purification_and_waste_water_treatment]]></guid></item><item><title><![CDATA[Does implementation of environmental law depend on new improvement of ecological terms? Fundamental solutions suggested.]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/608_Does_implementation_of_environmental_law_depend_on_new_improvement_of_ecological_terms_Fundamental_solutions_suggested]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/608_Does_implementation_of_environmental_law_depend_on_new_improvement_of_ecological_terms_Fundamental_solutions_suggested#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[To implement environmental law, it is necessary to have adequate, clear and precise interpretation (definitions) of the basic ecological terms, including the definition of ecosystem. The standard definition is vague. A new definition was published.]]></description><pubDate>Sun, 7 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/608_Does_implementation_of_environmental_law_depend_on_new_improvement_of_ecological_terms_Fundamental_solutions_suggested]]></guid></item><item><title><![CDATA[Posttraumatic Stress Disorder in Patients with HIV: A Review of the Current Literature]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/587_Posttraumatic_Stress_Disorder_in_Patients_with_HIV_A_Review_of_the_Current_Literature]]></link><category>Review</category><comments>http://blog.researchgate.net/masterblog/587_Posttraumatic_Stress_Disorder_in_Patients_with_HIV_A_Review_of_the_Current_Literature#comments</comments><author>joshmatacotta@gmail.com (Josh Matacotta)</author><description><![CDATA[<p>Several studies have found that people living with the <a href="http://www.nlm.nih.gov/medlineplus/ency/article/000602.htm" target="_blank" rel="nofollow">human immunodeficiency virus</a> (HIV) suffer from posttraumatic stress
disorder (PTSD) at a higher rate than that of the general population (Gore-Felton et al., 2001; Kimerling et al., 1999; Martinez et al., 2002; Mellins, Ehrardt, &amp; Grant, 1997). &nbsp;In addition,
people are living longer with the disease as a result of medical treatment advances, and a fast-growing population of individuals infected with HIV is coping with complex psychosocial demands of this
life-threatening illness.&nbsp; I will review the research that currently exists with regard to HIV and PTSD.&nbsp; Further, it is important to determine to what extent psychological treatment should
be integrated with the medical treatment of people living with HIV and AIDS.&nbsp; My aim is to evaluate the recent developments in the field regarding PTSD as a viable psychological diagnosis for
individuals living with HIV. &nbsp;</p>
<p>Also, I discuss the accumulating literature addressing the importance of assessment and treatment of PTSD in patients recently diagnosed with HIV, and the push for this becoming standard practice
in primary care settings.&nbsp; Another aim is to consider whether patients for whom the HIV diagnosis is the primary or sole traumatic event differ from patients who have experienced a significant
number of traumatic events prior to HIV diagnosis.</p>
<p><strong>Posttraumatic Stress Disorder</strong></p>
<p>In the&nbsp;<em>Diagnostic and Statistical Manual of Mental Disorders,&nbsp;</em>4th&nbsp;edition, text revision (DSM-IV-TR; American Psychiatric Association, 2000a), the defining characteristic
of a traumatic stressor is presence of a life-threat or threat to one’s physical integrity where the individual’s response is great fear, horror or helplessness.&nbsp; Traumatic stressors are
generally thought of as involvement or proximity to war combat, witnessing or being subjected to violent acts, torture, and natural or man-made disaster.&nbsp; Individuals may have intrusive thoughts
about these past experiences, or avoidant/numbing reactions to them.&nbsp; While this may be true of receiving a diagnosis for a life-threatening medical illness or disease, additional circumstances
specific to living with the medical condition warrant consideration as contributing to continued trauma.</p>
<p>The biological aspects of trauma were explored as well as the psychological effects of traumatic stressors.&nbsp; For example, the use of functional magnetic resonance imaging (fMRI) and positron
emission tomography (PET) has led to evidence of alteration in brain neurocircuitry in response to trauma. &nbsp;Specifically, patients with PTSD show greater activation of the amygdala and insula
and lesser activation in the anterior cingulate cortex (ACC) and ventromedial prefrontal cortex (Friedman &amp; Pitman, 2007; Shin et al., 2007).&nbsp; Chronically applied stress can inhibit
development of hippocampal neurons, cause certain neurons of the hippocampus to atrophy, and elevate cortisol levels.&nbsp; These effects of stress could have detrimental effects on the optimal
functioning of the immune system (Sapolsky, 2004).</p>
<p><strong>Posttraumatic Stress Disorder and Medical Illness as Trauma</strong></p>
<p>There are a number of research studies examining coexistence of PTSD and life-threatening medical illnesses and diagnoses.&nbsp; The subject of medical events as traumatic stressors has gained
considerable interest, and is becoming a focus of research. &nbsp;Medical diagnoses and events surrounding medical illness have been found to result in extreme fear, helplessness, or horror (Baum
&amp; Mundy, 2004). &nbsp;In fact, in the&nbsp;<em>Diagnostic and Statistical Manual</em>, 4th&nbsp;edition (DSM-IV; American Psychiatric Association, 1995), it was recognized that PTSD may be
precipitated by life-threatening medical illness or diagnosis.</p>
<p>Much research on PTSD in the medical population began with adult cancer patients, noting incidence of cancer-related PTSD ranging from 0% to 32%. A cancer diagnosis and treatment effects may also
produce trauma and stress, although rates of distress in this population are low and patients seem to cope effectively overall.&nbsp; Nonetheless, traumatic stress syndrome has been
observed&nbsp;(Kangas, Henry, &amp; Bryant, 2002). &nbsp;Research on PTSD following medical diagnosis and treatment were reviewed in the areas of cardiac medicine, vascular medicine, obstetrics,
gynecology, and HIV.&nbsp; Studies also included patient awareness under anesthesia and the experience of intensive care treatment.&nbsp; The purpose of reviewing the literature was to determine
whether the experience of severe physical illness, an event internal to the individual, satisfied the traumatic stress criterion for PTSD (Tedstone &amp; Tarrier, 2003).&nbsp; As research on
psychological trauma continues, issues surrounding the differences between medical stressors and more traditional sources of trauma are being highlighted.&nbsp; There is advocacy and disagreement on
the application of PTSD to those diagnosed with medical disease or illness (Mundy &amp; Baum, 2004).</p>
<p>Experiencing a subjective sense of life-threat as a result of some event is vital for the development of PTSD.&nbsp; Medical diagnoses and events, including myocardial infarction, a cancer
diagnosis and the severe effects of treatment, and HIV with its chronic course, have been found to result in extreme fear, helplessness, or horror.&nbsp; The intrusions and re-experiencing symptoms
that occur as part of posttraumatic stress experienced by those receiving life-threatening medical diagnoses, however, may be of a different type than those experienced by individuals exposed to
traditional traumas (Mundy &amp; Baum, 2004).</p>
<p>Tedstone and Tarrier (2003) examined the occurrence of PTSD in adults with medical conditions by identifying studies from a search of relevant articles in the Medline and PsychINFO databases
between 1985 to 2003.&nbsp; It was concluded that PTSD prevalence rates were highest in patients who had been in a life-threatening medical situation or received the diagnosis of a terminal illness
in comparison to the general population.&nbsp; One possible explanation of this is knowledge about disease recurrence and progression can produce greater PTSD symptoms compared to the initial
diagnosis, if the degree of life threat is perceived as more intense.</p>
<p><strong>Posttraumatic Stress Disorder and HIV Disease</strong></p>
<p>Understanding PTSD in people living with HIV or AIDS is necessary, as mental health impacts overall HIV treatment, health-related behaviors, and quality of life. &nbsp;Given the uncertainty and
disruption in every area of life for individuals living with HIV, anxiety and PTSD is not a surprising facet of life with HIV/AIDS.&nbsp; Some research exists on anxiety disorders resulting from HIV
infection, and coping mechanisms or self-management strategies by those living with HIV.&nbsp; Phillips and Morrow (1998) emphasized that anxiety is a universal problem for patients with HIV/AIDS
because the disease creates uncertainty and disruption in every aspect of patients’ lives.&nbsp; Although many anxiety-proving factors are similar across groups, it may vary by degree and type for
some.&nbsp; In other words, gay men, women and children may experience anxiety-provoking factors specific to them.&nbsp; The growing body of research suggests that rates of probable anxiety disorders
are roughly two to three times higher in persons with HIV/AIDS as compared to the general population (Kaplan et al., 1997; Perretta et al., 1996).</p>
<p>While prevalence rates of PTSD in HIV/AIDS have ranged from 30% to 64% (Botha, 1996; Kelly et al., 1998; Martinez et al., 2002), studying the nature of this relationship and assessing the impact
of the HIV/AIDS diagnosis on mental health has been problematic. &nbsp;PTSD may be particularly relevant to HIV/AIDS due to the traumatic impact of being infected (Kelly et al., 1998), which consists
of various “crisis points” such as learning one’s seropositive status, receiving the diagnosis of AIDS, beginning new treatment, discontinuing treatment, appearance of new symptoms, recurrence and
relapse and terminal illness (Flaskerud, 1995).</p>
<p>The future-oriented aspect of HIV disease requires those patients to confront and re-experience the trauma over and over again with each doctor’s visit, blood draw, discussion or disclosure of the
condition, changes in drug treatment, anticipated treatment failure, and disease stage.&nbsp; Mundy and Baum noted that in addition to flashbacks or intrusive thoughts of receiving the initial
diagnosis, re-experiencing occurs in thoughts about future-oriented events and may cause significant distress.&nbsp; (e.g., Will I live to watch my child graduate or get married?&nbsp; Will I have
excruciating pain once the disease takes me?&nbsp; Will my family be cared for after I am gone?)&nbsp; Thus, the focus of threat to life is not only based on a past event for medical patients but
also on the future.&nbsp; Of course, the question arises – if these events are future-oriented, is this still PTSD?</p>
<p><strong>The Current Issues</strong></p>
<p>Olley, Zeier, Seedat, and Stein (2005) conducted exploratory research to examine the prevalence of and factors associated with posttraumatic stress disorder in 149 recently diagnosed HIV/AIDS
patients in South Africa (mean time since diagnosis = 5.8 months,<em>SD</em>&nbsp;= 4.1). &nbsp;Multivariate analysis was used to investigate the discriminating factors for a positive history of
PTSD.&nbsp; Independent variables were derived from sociodemographic characteristics, medical status and disability, stressful life events and social support, coping styles and risky sexual
behaviors.&nbsp; Researchers used the MINI International Neuropsychiatric Interview (MINI; Sheehan et al., 1998), a 42-item clinician-administered checklist measuring stressful life events and degree
of impact during brief structured diagnostic interviews for major psychiatric disorders.</p>
<p>The findings of the study indicate that 22 patients (14.8%) met criteria for current PTSD.&nbsp; In eight patients, the index trauma was knowledge of the diagnosis of HIV/AIDS. &nbsp;The study
concluded that those patients with HIV-related PTSD did not differ significantly from other patients with non-HIV related PTSD on demographic or clinical features. &nbsp;Similar to the findings of
Hutton and colleagues (2001), results suggest that “many features of PTSD in HIV/AIDS are similar to those reported in PTSD patients in general” (Olley et. al, 2005).&nbsp;</p>
<p>The HIV/PTSD+ patients’ mean time since diagnosis (6.2 months,&nbsp;<em>SD</em>&nbsp;= 4.6) suggests that while trauma resulting from the initial HIV diagnosis was assessed, little else regarding
the experience of living with HIV was explored.&nbsp; Given the progressive nature of HIV/AIDS, there are various “crisis points” (Flaskerud, 1995) associated with PTSD symptoms.&nbsp; Olley et al.
concluded that for eight HIV/PTSD+ patients, the HIV diagnosis was the single most traumatic time point, but did not evaluate whether any PTSD symptoms such as intrusions were future oriented.&nbsp;
When determining what is measured as the criterion, observational research and qualitative analyses of intrusive thoughts experienced by patients, in addition to categorizing those experiences as
being future or past event oriented, are critical to the overall understanding of medical disorders as a cause of psychological trauma (Mundy &amp; Baum, 2004).&nbsp; In the sample as a whole, Olley
et al. reported that the majority of the participants were asymptomatic, but none were receiving antiretroviral drug treatment for the HIV despite a mean CD4 count of 397.0 (<em>SD</em>&nbsp;=
294.9).&nbsp; Additionally, there is no discussion about the stage of disease progression for any of the participants at the time of initial diagnosis other than CD4 counts.&nbsp; Even years later, a
diagnosis with a life-threatening disease such as HIV can result in significant PTSD symptomatology (Delahanty, Bogart &amp; Figler, 2004).</p>
<p>The research concedes that the relationship between HIV/AIDS and PTSD remains unclear.&nbsp; Also, prior traumatic events in the HIV patient population impact the severity of PTSD.&nbsp;
Nonetheless, PTSD patients reported significantly more work impairment and poor coping skills, such as the abuse of substances (Olley et al., 2005).&nbsp; This research adds to the growing body of
knowledge about the HIV population being burdened with significant stressors surrounding their medical condition.</p>
<p>Safren, Gershuny and Hendriksen (2003) examined the frequency and correlates of self-reported symptoms of posttraumatic stress among patients with HIV and self-reported medication adherence
problems.&nbsp; The sample consisted of 59 men and 16 women with HIV infection, the majority being white or African American, who were using the services of a community health center serving
primarily lesbian, gay, bisexual, and transgendered individuals.&nbsp; 98% of the men in the sample indicated their sexual orientation (29% heterosexual, 7% bisexual, 64% gay) as did 94% of the women
(80% heterosexual, 13% bisexual, 7% lesbian).&nbsp; Safren and colleagues used the Posttraumatic Diagnostic Scale (PDS) and substituted “the trauma” in the original measure with “being diagnosed
with/having HIV.”</p>
<p>Safren and colleagues found that more than half (<em>n</em>&nbsp;= 48/75 = 64%) of the sample met criteria for a diagnosis of PTSD related to the diagnosis of and living with HIV. &nbsp;Using a
series of multiple regression analyses, the researchers found that death anxiety was uniquely associated with total PTSD severity scores, contributing unique variance over and above the other
predictor variables of depression and satisfaction with social support.&nbsp; They also concluded that comprehensive psychosocial screening as a part of the medical care of patients with HIV is
needed, especially because many individuals with HIV are disenfranchised in some way before their diagnosis.</p>
<p>The use of self-report instruments, a narrow sample of patients with HIV, and the missing assessment of additional traumatic events in addition to the HIV diagnosis were considered limitations to
the study.&nbsp; Safren and colleagues suggested further research that examines whether patients with HIV reporting PTSD related to the diagnosis have additional traumatic stressors prior the HIV
diagnosis, and if diagnosis constitutes a “retraumatizing experience.”</p>
<p>There is growing debate about PTSD being the appropriate model to represent the psychological distress experienced by those diagnosed with medical conditions such as HIV.&nbsp; Some urge that a
new diagnosis may need to be formulated surrounding medical life-threatening illness and disease (Kagee, 2008; Mundy &amp; Baum, 2004).&nbsp; In a recent article published in the Journal of Health
Psychology, Kagee (2008) questioned the appropriateness of a PTSD diagnosis for people living with HIV and AIDS.&nbsp; He argued that “neither the experience of being HIV positive nor living with
AIDS is traumatic in DSM-IV-TR sense” (p.1010).&nbsp; Patients with HIV have an abundance of future-oriented concerns, but the “anchoring event” for PTSD must be the “receipt of notification” of
one’s HIV status in order for there to be a PTSD diagnosis (p.1009).&nbsp; Kagee argues that the anxiety, fear of physical decline and death because of having HIV does not qualify as a valid PTSD
symptom. &nbsp;Essentially, for there to be a valid PTSD diagnosis, one must suffer recurrent and intrusive recollections, dreams, or physiological reactivity from cues about the informer, and being
informed of (e.g., place, time, etc.) the HIV positive status.</p>
<p>In response to Kagee's assertion that medical diagnoses do not fit well with criterion A1,&nbsp;it is important to make clear that the DSM-IV-TR states “a threat to the physical integrity<em>of
self</em>&nbsp;or others” (emphasis added) and that there is no reference to time and place.&nbsp; Not only does the individual experience the ambit of receiving a diagnosis of HIV for which no cure
is available, but also, having HIV can be considered a threat to the individual’s physical integrity where fear and helplessness are common reactions to the initial diagnosis and ongoing treatment
with aggressive antiretroviral medications. &nbsp;Kagee (2008) argued that conceptualizing an HIV+ patient’s psychological status in terms of PTSD nosology is likely inaccurate.&nbsp; However, it is
important for the psychologist or future researcher to carefully define the construct being measured.&nbsp; Advocacy of current conceptual and methodological approaches to PTSD and stressful medical
conditions is beneficial to the research community despite differences that may be seen in the medical population and the traditional population being assessed for PTSD (Mundy &amp; Baum, 2004).</p>
<p><strong>Is PTSD an Appropriate Diagnosis for People with HIV?</strong></p>
<p>It is an assumption that the assessment of psychopathology in patients diagnosed with HIV or AIDS is paramount to their overall treatment plan.&nbsp; However, questions have arisen regarding the
appropriateness of PTSD as a mental health diagnosis given the specific nature of medical disease or illness. &nbsp;Is generalized anxiety disorder more appropriate, or should an anxiety disorder
more specific to this population be considered in the publication of the DSM-V.</p>
<p>What important differences exist between “knowledge of the HIV diagnosis” and “initial notification of the HIV diagnosis?” &nbsp;"Knowledge of" is an ongoing state, yet trauma was defined in this
way by the Olley et al. study.&nbsp; Similarly, trauma was defined as “being diagnosed with HIV” and “having HIV” in the Safren et al. study.&nbsp; Yet, others would argue that a much narrower
definition of the trauma is required.&nbsp; For example, there must be intrusive recollections of the health care worker who informed the patient about the diagnosis, and the experience of being
informed. Yet, do all of these concepts of trauma surrounding HIV have similar impacts on people with HIV?</p>
<p>Relatively little is known about the course of symptoms over time following trauma exposure (Orcutt, Erickson &amp; Wolfe, 2005; Perkonigg, Pfister, Stein, Hofler, Lieb, Maercker, &amp; Wittchen,
2005).&nbsp; There is general agreement that a growing number of studies are demonstrating HIV diagnosis as a traumatic stressor often leading to PTSD.&nbsp; Also, people living with HIV tend to
present with a significant number of traumatic events prior to HIV diagnosis.&nbsp; Does this then require an alteration in the approach to psychological and possibly medical treatment?&nbsp; Indeed,
not all persons experiencing traumatic medical events get PTSD.&nbsp; However, help with effective coping tools and with the psychological distress that ensues following an HIV or AIDS diagnosis is
instrumental.&nbsp; Medical and mental health professionals must recognize and intervene as necessary to help patients cope with stigma surrounding HIV disease and the disenfranchisement that tends
to plague people with HIV.&nbsp; Better HIV treatment adherence and outcomes correlate with primary care physicians screening patients for PTSD, anxiety and depression.&nbsp; (Olley et al., 2005;
Safren et al., 2003; Phillips &amp; Morrow, 1998; Delahanty, Bogart &amp; Figler, 2004).&nbsp; Yet, the literature suggests that medical patients are rarely screened routinely for PTSD (Tedstone
&amp; Tarrier, 2003; Olley et al.).</p>
<p><strong>Conclusions</strong></p>
<p>One must wonder whether it is important at all to determine whether the PTSD symptoms arise from the HIV diagnosis, or if simply knowing that a patient with HIV also suffers with PTSD, regardless
of the traumatic event(s), is enough so long as some treatment is sought.&nbsp; It seems that non-HIV-related PTSD has a similar effect on biology and psychosocial functioning of the individual as
does HIV-related PTSD.&nbsp; However, for patients without prior history of PTSD or trauma, it is important to know whether a diagnosis of HIV can cause PTSD.&nbsp; Having the best model for
exploring the effects of a life-threatening diagnosis or terminal illness is paramount to moving forward with best treatment practices.</p>
<p>Based on a review of all of the research articles discussed, an accurate definition of the construct “trauma” is required to correctly determine the impact of HIV on mental health aside from other
traumatic events.&nbsp; Whether the PTSD model can accommodate the differences that exist with medical traumas (e.g., future-oriented events) is a worthy topic for further exploration.&nbsp; It is
true that there is the single anchoring event, as referred to by some researchers.&nbsp; However, these future-oriented events can retraumatize some patients, returning them to the experience of
being initially diagnosed with HIV.&nbsp; How should those individuals be best treated in their mental health care to ensure successful medical treatment?&nbsp; How does an individual’s appraisal of
stress and coping mechanisms hinder or complement HIV medical treatment? &nbsp;Further research could explore these issues, as well as whether this population differs significantly from patients with
prior traumas, thus warranting a different mental health treatment approach.</p>
<p>Some gaps in the research are noted.&nbsp; There is a tremendous need for further research into this area with the Latino and Asian population.&nbsp; Also, given the fact that women have unique
stressors and suffer from PTSD at a disproportionately higher rate, more research on women with HIV is needed.&nbsp; Other suggestions for research include outcome studies of medical settings serving
individuals being diagnosed with and treated for HIV disease.&nbsp; Research should assess the differences in a patient’s overall treatment success in medical settings where ongoing mental health
treatment is integrated compared to those medical settings without a mental health component.</p>
<p><strong>References</strong></p>
<ul>
<li>American Psychiatric Association. (1995).&nbsp;<em>Diagnostic and statistical manual of mental disorders</em>. (4th&nbsp;ed.).&nbsp;&nbsp;&nbsp;&nbsp; Washington, D.C.: Author.</li>
<li>Baum, A. &amp; Mundy, E. (2004). Medical disorders as a cause of psychological trauma and posttraumatic stress disorder.&nbsp;<em>Current Opinion in Psychiatry, 17</em>, 123-128.</li>
<li>Delahanty, D. L., Bogart, L. M., &amp; Figler, J. L. (2004). Posttraumatic stress disorder symptoms, salivary cortisol, medication adherence, and CD4 levels in HIV-positive
individuals<em>.</em>&nbsp;<em>AIDS Care, 16</em>, 247-260.</li>
<li>Flaskerud, J. H. (1995). Psychosocial and psychiatric aspects<em>.</em>&nbsp;In J. H. Flaskerud &amp; P. J. Ungvarski (Eds.),&nbsp;<em>HIV/AIDS: A guide to nursing care</em>&nbsp;(3rd&nbsp;ed.).
Philadelphia, PA: Saunders.</li>
<li>Friedman, M. J., &amp; Pitman, R. K., (2007). New findings on the neurobiology of posttraumatic stress disorder.&nbsp;<em>Journal of Traumatic Stress, 20,</em>&nbsp;653-655.</li>
<li>Gore-Felton, C., Koopman, C., &amp; Spiegel, D. (2001). The influence of traumatic stress responses in HIV risk behavior. Presentation from the 22nd&nbsp;Annual Scientific Conference of the
Society of Behavioral Medicine, Seattle, Washington.</li>
<li>Hutton, H. E., Treisman, G. J., Hunt, W. R., Fishman, M., Kendig, N., Swetz, A., &amp; Lyketsos, C.G. (2001). HIV risk behaviors and their relationship to post-traumatic stress disorder among
women prisoners<em>.</em>&nbsp;<em>Psychiatric Services, 52</em>, 508-513.</li>
<li>Kagee, A. (2008). Application of the DSM-IV criteria to the experience of living with AIDS: some concerns.&nbsp;<em>Journal of Health Psychology.</em><em>&nbsp;13</em>, 1008-1011.</li>
<li>Kangas, M., Henry, J., &amp; Bryant, R. (2002). Posttraumatic stress disorder following cancer: A conceptual and empirical review.&nbsp;<em>Clinical Psychology Review</em>,&nbsp;<em>22</em>,
499-524.</li>
<li>Kimerling, R., Calhoun, K. S., Forehand, R., Armistead, L., Morse, E., Morse, P., Clark, R., &amp; Clark, L. (1999). Traumatic stress in HIV-infected women.&nbsp;<em>AIDS Education and
Prevention,</em>&nbsp;<em>11</em>, 321-330.</li>
<li>Martinez, A., Israelski, D., Walker, C., &amp; Koopman, C. (2002). Posttraumatic stress disorder in women attending human immunodeficiency virus outpatient clinics.&nbsp;<em>AIDS Patient Care and
STDs, 16</em>, 283-291.</li>
<li>Mellins, C. A., Ehrardt, A. A., &amp; Grant, W. F. (1997). Psychiatric symptomatology and psychological functioning in HIV-infected mothers.&nbsp;<em>AIDS Behavior</em>,&nbsp;<em>1</em>,
233-245.</li>
<li>Olley, B. O., Zeier, M. D., Seedat, S., &amp; Stein, D. J. (2005). Post-traumatic stress disorder among recently diagnosed patients with HIV/AIDS in South Africa<em>.</em>&nbsp;<em>AIDS
Care,</em>&nbsp;<em>17</em>, 550-557.</li>
<li>Orcutt, H., Erickson, D. J., &amp; Wolfe, J. (2005). The course of PTSD symptoms among Gulf War veterans: A growth mixture modeling approach<em>.</em>&nbsp;<em>Journal of Traumatic
Stress</em>.<em>17</em>, 195-202.</li>
<li>Perkonigg, A., Pfister, H., Stein, M., Hofler, M., Lieb, R., Maercker, A., &amp; Wittchen, H. (2005). Longitudinal course of posttraumatic stress disorder and posttraumatic stress disorder
symptoms in a community sample of adolescents and young adults.&nbsp;<em>Am J Psychiatry,</em>&nbsp;<em>162</em>, 1320-1327.</li>
<li>Phillips, K. D., &amp; Morrow, J. H. (1998). Nursing management of anxiety in HIV infection.&nbsp;<em>Issues in Mental Health Nursing</em>,&nbsp;<em>19</em>, 375-397.</li>
<li>Sapolsky, R. M. (2004).&nbsp;<em>Why zebras don’t get ulcers: The acclaimed guide to stress, stress-related diseases, and coping.&nbsp;</em>New York: Henry Holt and Company.</li>
<li>Shin, L. M., Bush, G., Whalen, P. J., Handwerger, K., Cannistraro, P. A., Wright, C. I., et al. (2007). Dorsal anterior cingulated function in posttraumatic stress disorder.&nbsp;<em>Journal of
Traumatic Stress, 20,</em>&nbsp;701-712.</li>
<li>Tedstone, J., &amp; Tarrier, N. (2003). Posttraumatic stress disorder following medical illness and treatment.&nbsp;<em>Clinical Psychology Review</em>,&nbsp;<em>23</em>, 409-448.</li>
</ul>]]></description><pubDate>Tue, 2 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/587_Posttraumatic_Stress_Disorder_in_Patients_with_HIV_A_Review_of_the_Current_Literature]]></guid></item><item><title><![CDATA[New plant species as a potent tool to clean water and to remove heavy metals]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/594_New_plant_species_as_a_potent_tool_to_clean_water_and_to_remove_heavy_metals]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/594_New_plant_species_as_a_potent_tool_to_clean_water_and_to_remove_heavy_metals#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[This is the first time the phytoremediation potential of a new wide-spread species of plants was discovered. The plant removed the toxic metals cadmium, lead, copper, zinc (Cd, Pb, Cu, Zn) from water with great efficiency. As a result, water quality improved dramatically with prospect of new technology]]></description><pubDate>Thu, 4 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/594_New_plant_species_as_a_potent_tool_to_clean_water_and_to_remove_heavy_metals]]></guid></item><item><title><![CDATA[Foreign body-induced granulation tissue: A novel source of adult stem cells]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/589_Foreign_body-induced_granulation_tissue_A_novel_source_of_adult_stem_cells]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/589_Foreign_body-induced_granulation_tissue_A_novel_source_of_adult_stem_cells#comments</comments><author>jilpa.patel@hektoen.org (Jilpa Patel)</author><description><![CDATA[<p>An inert foreign body placed in the subcutaneous tissue induces new tissue that encapsulates the foreign body (called granulation tissue). In a <a href=
"http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B83WW-4X8YTM9-1&amp;_user=10&amp;_coverDate=09%2F22%2F2009&amp;_alid=1231723784&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_cdi=33797&amp;_docanchor=&amp;view=c&amp;_ct=375&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=c923fed9f523193a1db8ec498006cbff" target="_blank" rel="nofollow">
new study</a> published in the journal <i>Translational Research</i>, Dr. Jilpa Patel and her group at the Cook County Hospital and Hektoen Institute of Medicine in Chicago have isolated and
characterized adult stem cells from granulation tissue in rats.</p>
<p>These stem cells called granulation-tissue stem cells (GTSC) can be multiplied infinitely outside the body, and are rich in growth and other stem cell factors. GTSC readily differentiated to bone,
cartilage and fat cells when cultured in specialized media, an important property of multi-potent stem cells. When injected into the body with an injured organ, GTSC recognized and engrafted only to
the injured organ and not to normal organs. It was possible to freeze GTSC for long-term storage without loss of potency. Because GTSC can be easily obtained from the patient’s own body and can be
stored long-term, it can serve as an excellent source of stem cells for use in repair of damaged organs.</p>
<p>Stem cells are by and large categorized as either</p>
<ul>
<li>a) embryonic stem cells, that are obtained from the inner cell mass of an embryo or</li>
<li>b) adult stem cells, those that are derived from adult tissues.</li>
</ul>
<p>The use of embryonic stem cells is controversial as it is hampered by ethical, political and safety concerns. In contrast, the use of adult tissue derived stem cells (bone marrow cells being the
commonest of adult stem cells) is free of such concerns and therefore of immediate utility.&nbsp; Adult stem cells have been obtained from many tissue including bone marrow, adipose tissue, skin,
hair, dental pulp, and omentum. Because granulation tissue derived stem cells described by Dr. Jilpa Patel in this study are obtained from a rapidly regenerating granulation tissue, they are
activated stem cells, and therefore they could prove to be more potent than other adult tissue-derived stem cells.&nbsp; Presently, the authors are conducting further studies to assess the utility of
GTSC in kidney disease, liver disease and osteoarthritis.</p>
<p>This article is based on the manuscript ‘<a href=
"http://www.sciencedirect.com/science?_ob=ArticleURL&amp;_udi=B83WW-4X8YTM9-1&amp;_user=10&amp;_coverDate=09%2F22%2F2009&amp;_alid=1231723784&amp;_rdoc=1&amp;_fmt=high&amp;_orig=search&amp;_cdi=33797&amp;_docanchor=&amp;view=c&amp;_ct=375&amp;_acct=C000050221&amp;_version=1&amp;_urlVersion=0&amp;_userid=10&amp;md5=c923fed9f523193a1db8ec498006cbff" target="_blank" rel="nofollow">Foreign
body-induced granulation tissue is a source of adult stem cells</a>’ published in the journal Translational Research. (Citation: doi: 10.1016/j.trsl.2009.08.010)</p>]]></description><pubDate>Tue, 2 Mar 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/589_Foreign_body-induced_granulation_tissue_A_novel_source_of_adult_stem_cells]]></guid></item><item><title><![CDATA[ResearchGATE is featured in the New York Times]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/581_ResearchGATE_is_featured_in_the_New_York_Times]]></link><category>News</category><comments>http://blog.researchgate.net/masterblog/581_ResearchGATE_is_featured_in_the_New_York_Times#comments</comments><author>berci.mesko@gmail.com (Bertalan Mesko)</author><description><![CDATA[<p>While there are more and more entries published in the <a href="http://blog.researchgate.net/" target="_blank" rel="nofollow">MasterBlog</a>, ResearchGATE was featured in the <a href=
"http://www.nytimes.com/external/venturebeat/2010/02/19/19venturebeat-researcher-creates-facebook-for-scientists-22081.html#" target="_blank" rel="nofollow">New York Times</a>. An excerpt from the report in which founder Dr. Ijad
Madisch describes how ResearchGATE was launched:</p>
<p>"...Enter <a href="http:///../../" target="_blank" rel="nofollow">ResearchGATE</a>, which its founder Dr. Ijad Madisch (pictured) fairly describes as “Facebook for scientists.” In close to two years of operation, ResearchGate has
built a social network of more than 250,000 researchers from 196 countries. Over 1,000 subgroups have been formed for specific disciplines, and 60,000 research documents have been uploaded for
sharing with others on the site. These guys aren’t pretending they’re farmers.</p>
<p>“People ask a question, presenting an issue they have in the lab, and anyone can answer the question. This is happening on a daily basis,” said Madisch, who was in Silicon Valley this week
drumming up support for ResearchGATE from researchers at universities and private research labs, while also networking with potential investors, although he added the company is currently “well
funded.”</p>
<p><img width="200" height="151" alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=581&editor_action=getfile&editor_filename=new_york_times_logo_23.jpg" /></p>]]></description><pubDate>Sat, 27 Feb 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/581_ResearchGATE_is_featured_in_the_New_York_Times]]></guid></item><item><title><![CDATA[Introduction to genetic algorithm]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/492_Introduction_to_genetic_algorithm]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/492_Introduction_to_genetic_algorithm#comments</comments><author>Mehran Parhebafieh</author><description><![CDATA[<p><strong>Introduction</strong><br />
<br />
<a href="http://en.wikipedia.org/wiki/Genetic_algorithm" target="_blank" rel="nofollow">Genetic algorithm</a> is an <a href="http://en.wikipedia.org/wiki/Artificial_intelligence" target="_blank" rel="nofollow">artificial intelligence</a> (AI) algorithm used to
solve problems that can't be solved with a mathematic formula.<br />
<br />
It is inspired by the theory of evolution which uses genes and chromosomes to evolve. The generations that evolve are your solutions to the problem. To understand how this algorithm works, it is good
if you have some knowledge about evolution and DNA and how the 'mom' and 'dad' pass their DNA to their children.<br />
<br />
<strong>Values</strong></p>
<p>Genes: A string of binary numbers (0 and 1).<br />
Chromosomes: A group of genes.<br />
Population/Generation: A group of chromosomes.<br />
<br />
To setup your values, you must first look at your problem and find what are the values required. Let's take a simple example, we want to find what equation gives us the number 30. What we need here
are numbers and operators and let's say we want to have an equation with 3 numbers in it. We would setup our genes like this (note that you can give them the value you want):<br />
<br />
0000 = 0<br />
0001 = 1<br />
0010 = 2<br />
0011 = 3<br />
0100 = 4<br />
0101 = 5<br />
0110 = 6<br />
0111 = 7<br />
1000 = 8<br />
1001 = 9<br />
1010 = +<br />
1011 = -<br />
1100 = *<br />
1101 = /<br />
<br />
These are our genes. To generate a chromosome, we need to choose random genes and put them together. When you generate a chromosome, you can make it completely random which could give something like
"1+-+3" or make it generate valid equation from the beginning like "1+2+3". Now, we need 5 genes (3 numbers + 2 operators), so we would have a chromosome like:<br />
<br />
00111100011110101001 &lt;- which is 3 * 7 + 9<br />
<br />
You can see the genes as values in the DNA, every pair of bits have their own value. We generate a population using the same function. The population can have as many chromosomes as you want. In this
example, you can generate 100 chromosomes, it would be enough. To save your chromosomes you can create a string and consider every 0 and 1 as a character, or save it in an array of short (8 bits)
/int (32 bits depending on your OS) which will take less memory.<br />
<br />
<strong>Analysis</strong><br />
<br />
Once you have your generation, loop through every generated chromosomes and see if one of them gives you the solution you seek (in this case, 30). For every chromosome, set a fitness score which is a
value that specifies how far the chromosome is to the solution. An example of a fitness score for our problem would be:<br />
<br />
01011010011110110111 &lt;- we will calculate the fitness score of this chromosome, which is 5 + 7 - 7<br />
5 + 7 - 7 = 5<br />
1/(30-5) = 0.04 &lt;- this is the fitness score of our chromosome, in our case, the closer it is to 1, the closer it is to the solution.<br />
<br />
If you don't find the solution, you need to generate a new generation by creating babies.<br />
<br />
<strong>Generate New Population</strong><br />
<br />
There are many ways to generate a new population. We will use the one called 'Crossover Rate'. First you need to choose 2 chromosomes at random (this is where the fitness score comes handy, if you
match 2 chromosomes that are near your solution, it increases the chance to find the solution) and generate a random number between 1 and the length of your chromosomes (in this case, 20). Take the 2
chromosomes and switch each parts:<br />
<br />
1. 00111100 011110101001<br />
2. 01011010 011110110111<br />
---------------------------------<br />
1. 00111100 011110110111<br />
2. 01011010 011110101001<br />
<br />
You can see here the random number was 8 and we switched every parts (before and after 8) and created 2 babies using their parents' DNA. Do the same until you made babies with all the chromosomes.
You will now have a population of 200 chromosomes.<br />
<br />
You can set a mutation rate for every gene, which should be at a very low level, such as 1%. If a gene mutates, you need to change it to a random gene, which can go better or worse.<br />
<br />
<strong>Invalid Chromosomes</strong><br />
<br />
You can either keep them or kill them. I prefer to kill them as when they are invalid they become very useless, but you can make a function that fixes an invalid chromosome.<br />
<br />
<strong>Conclusion</strong><br />
<br />
This is the very basic of the algorithm. Using this algo, you can solve many problems such as where can we fit the biggest circle in a given GUI or how many boxes can fit in a containers. It is an
algo that you must program yourself to understand it well, so open your IDE and start coding!</p>]]></description><pubDate>Fri, 5 Feb 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/492_Introduction_to_genetic_algorithm]]></guid></item><item><title><![CDATA[Safe Electronic Health Record Use Requires a Comprehensive Monitoring and Evaluation Framework]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/485_Safe_Electronic_Health_Record_Use_Requires_a_Comprehensive_Monitoring_and_Evaluation_Framework]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/485_Safe_Electronic_Health_Record_Use_Requires_a_Comprehensive_Monitoring_and_Evaluation_Framework#comments</comments><author>Dean Sittig</author><description><![CDATA[1: Ability to report safety events related to use 2: Enhanced certification 3: Self-assessment of 8 aspects of the EHR safe use framework have been addressed 4: On-site, in-person accreditation of EHRs as implemented & used 5: National EHR-related adverse event investigation board that reviews incidents.]]></description><pubDate>Tue, 2 Feb 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/485_Safe_Electronic_Health_Record_Use_Requires_a_Comprehensive_Monitoring_and_Evaluation_Framework]]></guid></item><item><title><![CDATA[The Threat of Shampoo to the Biosphere]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/466_The_Threat_of_Shampoo_to_the_Biosphere]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/466_The_Threat_of_Shampoo_to_the_Biosphere#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[This paper indicated that components of shampoo pose a dramatic danger and hazard to intimate ecosystem services that are a keystone for the security and stability of the biosphere. Foam from shampoo was found to be of much more environmental hazard than previously thought. ]]></description><pubDate>Sat, 30 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/466_The_Threat_of_Shampoo_to_the_Biosphere]]></guid></item><item><title><![CDATA[Evolution in Health and Medicine Sackler Colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/467_Evolution_in_Health_and_Medicine_Sackler_Colloquium_Stochastic_epigenetic_variation_as_a_driving_force_of_development_evolutionary_adaptation_and_disease]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/467_Evolution_in_Health_and_Medicine_Sackler_Colloquium_Stochastic_epigenetic_variation_as_a_driving_force_of_development_evolutionary_adaptation_and_disease#comments</comments><author>Mamuka Khvedelidze</author><description><![CDATA[Neo-Darwinian evolutionary theory is based on exquisite selection of phenotypes caused by small genetic variations, which is the basis of quantitative trait contribution to phenotype and disease. Here, we propose a new non-Lamarckian theory for a role of epigenetics in evolution.]]></description><pubDate>Sun, 31 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/467_Evolution_in_Health_and_Medicine_Sackler_Colloquium_Stochastic_epigenetic_variation_as_a_driving_force_of_development_evolutionary_adaptation_and_disease]]></guid></item><item><title><![CDATA[Endotoxin and cancer: good remarks on TLRs]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/464_Endotoxin_and_cancer_good_remarks_on_TLRs]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/464_Endotoxin_and_cancer_good_remarks_on_TLRs#comments</comments><author>Mamuka Khvedelidze</author><description><![CDATA[The hypothesis that components of bacteria may retard cancer progression dates back to William B. Coley's therapeutic experiments ("bacterial vaccine") in the 1890s.]]></description><pubDate>Sat, 30 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/464_Endotoxin_and_cancer_good_remarks_on_TLRs]]></guid></item><item><title><![CDATA[Immune Therapy for Cancer]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/462_Immune_Therapy_for_Cancer]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/462_Immune_Therapy_for_Cancer#comments</comments><author>Mamuka Khvedelidze</author><description><![CDATA[Over the past decade, immune therapy has become a standard treatment for a variety of cancers. Monoclonal antibodies, immune adjuvants, and vaccines against oncogenic viruses are now well-established cancer therapies. Immune modulation is a principal element of supportive care.]]></description><pubDate>Sat, 30 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/462_Immune_Therapy_for_Cancer]]></guid></item><item><title><![CDATA[Genetic variation in the Ahsg: one mechanism determining insulin resistance]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/457_Genetic_variation_in_the_Ahsg_one_mechanism_determining_insulin_resistance]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/457_Genetic_variation_in_the_Ahsg_one_mechanism_determining_insulin_resistance#comments</comments><author>asg@genetics.wayne.edu (Anton-Scott Goustin)</author><description><![CDATA[<p>My "favorite gene" is on human chromosome 3q27. It encodes a moderate-sized phosphorylated glycoprotein (yes!) which is secreted at a high rate from hepatocytes, into the bloodstream. The gene is
called AHSG (in H. sapiens), Ahsg (mouse), or sometimes fetuin-A. The protein was discovered as the first fetal protein (yes!) in 1944 in Sweden, and published in Nature:<br />
<br />
<em>Pedersen, K.O. (1944). Fetuin, a New Globulin Isolated from Serum. Nature 154, 575.</em><br />
<br />
We became interested in this gene in 1991 when we cloned the human cDNA using a homologous rat probe, and expressed the human ORF in insect cells. The cells produced a phosphorylated glycoprotein
which strongly blunted the tyrosine kinase (TK) activity of the insulin-activated insulin receptor (IR). The glycoprotein does not bind to the insulin site on the IR, but to the extracellular portion
of the beta subunit of the IR. It binds 5 times better to insulin-activated IR than to insulin-naive IR. We think it thus "picks out" the 1% of cell surface IR which are in functional complexes, and
selects them for blunting. When blunted, the TK is down-regulated, and instead there is SER phosphorylation of IRS-1 and -2 which acts to confound insulin's sharp edge.<br />
<br />
In 2002, we showed that a mouse null for both alleles of Ahsg was quite the opposite of type 2 diabetes: it was super-sensitive to insulin! and the mouse failed to gain weight on a prolonged high-fat
(HF) diet:<br />
<br />
<em>Mathews, S.T., Singh, G.P., Ranalletta, M., Cintron, V.J., Qiang, X., Goustin, A.S., Jen, K.L., Charron, M.J., Jahnen-Dechent, W., and Grunberger, G. (2002). Improved insulin sensitivity and
resistance to weight gain in mice null for the Ahsg gene. Diabetes 51, 2450-2458.</em><br />
<br />
Many clinical groups have now looked at AHSG gene function, and corroborated our prediction that this gene helps to underly insulin resistance and obesity, including:<br />
<br />
<em>Lavebratt, C., Wahlqvist, S., Nordfors, L., Hoffstedt, J., and Arner, P. (2005). AHSG gene variant is associated with leanness among Swedish men. Hum Genet 117, 54-60.</em></p>]]></description><pubDate>Thu, 28 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/457_Genetic_variation_in_the_Ahsg_one_mechanism_determining_insulin_resistance]]></guid></item><item><title><![CDATA[Academic Search Engine Optimization (ASEO): Optimizing Scholarly Literature for Google Scholar & Co.]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/449_Academic_Search_Engine_Optimization_ASEO_Optimizing_Scholarly_Literature_for_Google_Scholar_Co]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/449_Academic_Search_Engine_Optimization_ASEO_Optimizing_Scholarly_Literature_for_Google_Scholar_Co#comments</comments><author>Jöran Beel</author><description><![CDATA[Have you ever thought about how to get your scientific article into a top position in Google Scholar's result lists? In our article "Academic Search Engine Optimization (ASEO)" we provide guidelines on how to optimize your research articles for Google Scholar.]]></description><pubDate>Wed, 13 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/449_Academic_Search_Engine_Optimization_ASEO_Optimizing_Scholarly_Literature_for_Google_Scholar_Co]]></guid></item><item><title><![CDATA[Commons, Users, Service Providers - Internet (Self-) Regulation and Copyright]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/447_Commons_Users_Service_Providers-Internet_Self-Regulation_and_Copyright]]></link><category>Conferences</category><comments>http://blog.researchgate.net/masterblog/447_Commons_Users_Service_Providers-Internet_Self-Regulation_and_Copyright#comments</comments><author>jlussi@iri.uni-hannover.de (Dennis Jlussi)</author><description><![CDATA[<p>On March 17-18, 2010, an international conference with the title <strong>Commons, Users, Service Providers - Internet (Self-) Regulation and Copyright</strong> will take place in Hannover. The
conference is hosted by <em>Prof Dr Axel Metzger</em> (Leibniz Universität Hannover, Institute for Legal Informatics) together with <em>Prof Dr Thomas Dreier</em> (Karlsruhe Institute of Technology)
and <em>Prof Dr Gerald Spindler</em> (Georg-August-Universität&nbsp;Göttingen). An excerpt from the conference website:</p>
<p>"Self-regulation of the internet has been controversial from the very beginning. Liberal voices have emphasized the positive effects of a truly global medium of <strong>unrestricted
communication</strong> where new ways of collaboration amongst creators, users and providers may be implemented. For conservatives, the internet provides a biotope for all types of illegal activity
including copyright <strong>‘piracy’</strong>. However,state-driven regulation is hardly ever effective due to the decentralized architecture of the internet andthe territorially restricted
sovereignty of states.<br />
<br />
The conference highlights three different models of regulation for copyright issues; the self-regulation of free software and content communities, the de-regulation of ISP‘s liability and the strict
regulation of personal and other privileged use by copyright limitations and exceptions."</p>
<p>Those three models will be discussed in three conference sessions, each with very well renommed speakers, including, for example, <em>Prof Eben Moglen</em> (Columbia University, New York City),
who played a vital role in the process of drafting the General Public Licence (GPL)&nbsp;version 3.</p>
<p>More information is available at the <a href="http://www.iri.uni-hannover.de/conference.html" target="_blank" rel="nofollow">conference website</a>.</p>
<p><img width="260" height="84" alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=447&editor_action=getfile&editor_filename=rg1.jpg" /></p>]]></description><pubDate>Mon, 25 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/447_Commons_Users_Service_Providers-Internet_Self-Regulation_and_Copyright]]></guid></item><item><title><![CDATA[Facilitation and Attention]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/432_Facilitation_and_Attention]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/432_Facilitation_and_Attention#comments</comments><author>grysmith@telus.net (Graeme Smith)</author><description><![CDATA[<p>Recent research has shown that facilitation follows attention in the Cerebral Cortex.</p>
<p>In order to understand why this might be, it is important to recognize the fact that the 40 hertz signal noted in a recent article on anesthesia, and Facilitation might be connected. What the
anesthetist discovered, was a link between the 40 hertz signal, and Long-term Implicit Memory.</p>
<p>One model of Cerebral Plasticity, suggests that the Facilitation effect, is just as much a trigger of cerebral plasticity, as LTP is a trigger of Hippocampal Plasticity. To understand how this
might work, we need to look at the nature of the biochemical pathway that links synapses to the DNA, something that is well characterized for the hippocampal neurons and the NMDA ion channel.</p>
<p>The Facilitation effect, which reverses almost instantly cellular habituation, is triggered by the S synapse, which is a Calcium synapse that pumps calcium into the cell. The primary difference
between this and the NMDA synapse, is the fact that the S synapse does not also, pump Potasium out of the cell, potentiating the cell.</p>
<p>What facilitation makes possible is strings of activation of the same cell. Habituation would attenuate the firing of the cell, as Calcium content dropped in the Axial Buds. This is thought to be
because Calcium makes it practical for NeuroTransmitter Vessicles to bond to the Presynaptic surface so that they can secrete the NeuroTransmitter into the synaptic gap.</p>
<p>A shortage of calcium, due to a supply shortage, would therefore result in a gradual attenuation of the signal, as the same neuron fires multiple times. This effect called habituation will reverse
as soon as a calcium supply hits the axion buds.</p>
<p>The Facilitative effect is therefore a result of an increase in supply of Calcium to the Axion.</p>
<p>However this is not all that is happening when the S synapse fires. The calcium reacts with other chemicals in the cell, causing the formation of a secondary messenger called cAMP The combination
of increased calcium, and a supply of cAMP causes a number of chemical pathways to operate, which trigger eventually DNA expression, that triggers the growth of new Synaptic Spikes, and new Neural
processes such as dendrites, and Axions.</p>
<p>The link between the 40 hertz signal and implicit memory probably happens because of activation of the S synpase.</p>
<p>The link to Attention however that is suggested by the new work linking Facilitation to Attention, probably lies in the direction of the 40 hertz signal during pre-activation of cortex areas by
the Thalamus in the bottom-up attention system.&nbsp;</p>
<p>Other blog entries written by Graeme Smith:</p>
<ul>
<li><a href="http://blog.researchgate.net/masterblog/314_Phosphorylation_the_link_between_Bipolar_and_Schizophrenia" target="_blank" rel="nofollow">Phosphorylation, the link between Bipolar and Schizophrenia</a></li>
<li><a href="http://blog.researchgate.net/masterblog/360_A_possible_role_for_the_anterior_cingulate_cortex_in_hypnosis" target="_blank" rel="nofollow">A possible role for the anterior cingulate cortex in hypnosis</a></li>
</ul>]]></description><pubDate>Wed, 20 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/432_Facilitation_and_Attention]]></guid></item><item><title><![CDATA[And you thought we would all perish because of global warming]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/433_And_you_thought_we_would_all_perish_because_of_global_warming]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/433_And_you_thought_we_would_all_perish_because_of_global_warming#comments</comments><author>sebastiandarr@gmx.de (Sebastian Darr)</author><description><![CDATA[Taking into consideration the rates of mutation at both the germline and somatic-cell levels and their likely effects, a substantial reduction in human fitness can be expected over the next few centuries in industrialized societies unless novel means of genetic intervention are developed.]]></description><pubDate>Thu, 21 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/433_And_you_thought_we_would_all_perish_because_of_global_warming]]></guid></item><item><title><![CDATA[Information Wants To Be Free]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/408_Information_Wants_To_Be_Free]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/408_Information_Wants_To_Be_Free#comments</comments><author>Paul O'Donohoe</author><description><![CDATA[<p>The open access "movement" has existed for decades, but with the coming of the digital age in the 90's it truly bloomed as the distribution cost of electronic media dropped to essentially nothing.
Some groups completely embraced the paradigm-shifting potential of the internet; open-source software and piracy being the main examples which come to mind. And while individual scientific
disciplines took advantage of the new, more efficient way of searching for and distributing journal articles, the science community as a whole has still not tapped in to the full potential offered by
the near limitlessly connected world in which we now live.<br />
<br />
I am personally a big fan of the concept of a truly open scientific community that shares findings and raw data via the internet in a melting-pot of consilience. I'm aware that such a vision is
extremely naive, not least because of the strangle-hold the big journals currently hold on what is perceived as "proper publishing" and the financial motivators so often required to secure funding
for good science. None the less, websites such as ReasearchGATE demonstrate the possibilities which can be unlocked by simply linking together people and ideas. And open access journals <a href=
"http://www.doaj.org/" title="do">do</a> <a href="http://www.openj-gate.com/Search/QuickSearch.aspx" title="exist" target="_blank" rel="nofollow">exist</a> and can be made to work. However what impact does making a research paper
open access have?</p>
<p><img width="159" height="241" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=408&editor_action=getfile&editor_filename=lock.jpg" alt="" /><br />
<br />
A 2008 paper, <a title="Open access publishing, article downloads, and citations: randomised controlled trial" href="http://www.bmj.com/cgi/content/full/337/jul31_1/a568" target="_blank" rel="nofollow"><i>"</i><i>Open access
publishing, article downloads, and citations: randomised controlled trial"</i></a> (Davis et al) took a suitably scientific approach to this question by randomly assigning 247 articles published in
11 journals of the American Physiological Society to open access status between January and April 2007. The control group of 1372 articles was articles available via subscription, the traditional
access model for the American Physiological Society’s journals for the first year of an articles life. The researchers looked at a number of related variables- the number of abstract and full article
downloads, and the number of times a given article was cited in the year following its publication.<br />
<br />
Unsurprisingly removing subscription restriction lead to a significant increase in full text downloads (89% higher for open access articles compared to subscription articles)<i>.</i> Interestingly,
however, despite the increased number of downloads this did not translate into an increased level of citation. While 59% of the open access articles were cited a year later, 63% of the subscription
articles were cited. The authors concluded that open access to articles in fact reduced the chance of the article being cited (although not significantly) compared to subscription articles, and that
<i>"open access increases the readership of articles but has no effect on the number of citations in the first year after publication."</i><br />
<br />
The main issues with these findings, however, is that the researchers made the articles open access at random, when in fact there is nothing random about the articles made available in the real
world. Indeed a number of studies have shown that open access articles are consistently cited more often than subscription ones (an interesting look at the issue <a href=
"http://www.publishingresearch.net/documents/Citations-finalversion.pdf" title="here">here</a>), with the suggestion being that it is this very non-random nature of article availability which drives
the perceived benefit of making a paper open access. In other words, there is self-selection bias in open access papers, in that only the "best" papers are made available this way, and hence they
inevitably will be cited more.&nbsp;<br />
<br />
However a paper from the start of this year, <i><a href="http://arxiv.org/abs/1001.0361" title=
"&quot;Self-Selected or Mandated, Open Access Increases Citation Impact for Higher Quality Research&quot;" target="_blank" rel="nofollow">"Self-Selected or Mandated, Open Access Increases Citation Impact for Higher Quality
Research"</a></i> (Gargouri et al, 2010) has questioned this very assumption, by comparing the impact of self-selective self-archiving (i.e. researchers choosing to make their articles freely
available), with that of mandated open access (i.e. research institutions forcing their staff to make <i>all</i> research freely available as it is produced) for 27,197 articles published between
2002-2006 in 1,984 journals. As expected, when controlling for a number of other variables linked to citation, open access articles were cited significantly more than non-open access articles.<br />
<br />
Most interesting however was the finding that it didn't matter whether the article had been chosen to be make open access, or was merely made available due to institution policy, the open access
citation advantage was still found. The authors concluded that it is <i>"highly unlikely that the OA advantage is either entirely or mostly the result of an author bias toward selectively
self-archiving higher quality – hence higher citeability – articles."</i> Higher quality articles were cited more, but this was independent of whether the author had chosen to make the article
available themselves.<br />
<br />
Making your research open access gets it cited more. Is there anything more a scientist could ask for? The dissemination of knowledge is one of the core tenets of science and should be, in my
opinion, one of the core principles of any society. As an added bonus, with original research freely available online anyone making dodgy claims, such as poor media reporting, could be fact checked
far more easily by members of the public. It's win-win in my eyes.</p>]]></description><pubDate>Tue, 12 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/408_Information_Wants_To_Be_Free]]></guid></item><item><title><![CDATA[Psychoneuroimmunology discussion group]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/411_Psychoneuroimmunology_discussion_group]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/411_Psychoneuroimmunology_discussion_group#comments</comments><author>Peter Todd</author><description><![CDATA[<p>I have just completed my personal profile for membership of the proposed&nbsp;psychoneuroimmunology discussion&nbsp;group within ResearchGATE. This interdisciplinary science which emerged from the
field of psychosomatic research, was founded by such pioneers as the late Professor George Solomon M.D. with whom I had the privelege of &nbsp;working during the early 1980's as a member of the
Biopsychosocial AIDS Project at the University of California, San Francisco, USA. Professors Solomon, Klaus Bahnson, George Engel&nbsp;and others, including myself had previously worked in the field
now known as psycho-oncology and with other immunologically mediated and resisted disease, including autoimmune disorders and infections.</p>
<p><img src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=411&editor_action=getfile&editor_filename=stockxpertcom_id30313581_jpg_8d70477017e52a0fa68669dfeb03049c.jpg" alt="" /></p>
<p>Engel (1977) had published a seminal&nbsp;paper titled "The need for a new medical model: a challenge for biomedicine" <em>Science</em>, 196, pages 129-36 as one of the figurative chorus of
researchers who had perceived Kuhnian anomalies in biomedical research and hence the need for a paradigm shift in the&nbsp;scientific understanding of disease. The proposed paradigm shift implied
multifactorial concepts of causality in which psychosocial and&nbsp;mental factors, including such&nbsp;unconscious variables as ego-defences and affects would be encompassed in the derivation of
robust and useful scientific predictions of illness morbidity and mortality.</p>
<p>The biological mediators of the impact of psychosocial and mental factors would need to be included in research studies which would move the psychosomatic and psychoneuroimmunological fields
beyond mere&nbsp;correlations without necessarily implying causality. In the HIV/AIDS field, the simultaneous analysis of psychosocial factors, biological mediators including neuroendocrine, cytokine
and immune system variables and HIV progression still remains an important issue for future psychoneuroimmunological&nbsp;research. Perhaps partly because of funding priorities in HIV related
research.</p>
<p>My recent paper "Unconscious Mental Factors in HIV Infection",&nbsp;published in the journal "M<a href="http://www.mindmatter.de/" target="_blank" rel="nofollow">ind and Matter</a>", Volume 6, Issue 2, (2009) explores the
history of psychoneuroimmunology while suggesting a new paradigm of scientific understanding due to Kuhnian anomalies (such as multiple drug resistance and rapid mutation)&nbsp;with the traditional
medical and Jenner/Pasteur models of infectious disease. The traditional medical model is neither multifactorial nor biopsychosocial in its understanding of the determinants of disease onset,
morbidity and mortaity.</p>
<p>I would value comments.</p>
<p>Peter B. Todd&nbsp;</p>]]></description><pubDate>Thu, 14 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/411_Psychoneuroimmunology_discussion_group]]></guid></item><item><title><![CDATA[A New Concept For Ecosystems]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/410_A_New_Concept_For_Ecosystems]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/410_A_New_Concept_For_Ecosystems#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[Major functions of ecosystem are traditionally being described in a dogmatic, stagnant, and antiquated way. A paper was published with a new conceptual addition to key functions of aquatic ecosystem: the latter is seen as a kind of a grand autonomous bioreactor governed by a diverse genetic pool]]></description><pubDate>Wed, 13 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/410_A_New_Concept_For_Ecosystems]]></guid></item><item><title><![CDATA[The future school – what can it be like?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/397_The_future_school_what_can_it_be_like]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/397_The_future_school_what_can_it_be_like#comments</comments><author>Victor Gargay</author><description><![CDATA[<p>The future school is a school for a pupil. The educational institution monopoly will give way to monopoly of self educating person. It's up to him/her to solve as to what and how to learn. Adults
- wise and careful instructors - help the growing person to understand his/her mission in this world and create safe and comfortable conditions for self-development and self-education.</p>
<p><img width="420" height="279" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=397&editor_action=getfile&editor_filename=%25D1%2581%25D0%25BE%25D0%25B2%25D1%2580%25D0%25B5%25D0%25BC%25D0%25B5%25D0%25BD%25D0%25BD%25D0%25B0%25D1%258F%2B%25D1%2588%25D0%25BA%25D0%25BE%25D0%25BB%25D0%25B0.jpeg" alt="" /></p>
<p>&nbsp;Possibly, at future school there will be no classes, divisions of children into groups on abilities. There are not many teachers, but&nbsp; lots of parents, students and&nbsp; scholars of
various high schools, grandmothers and grandfathers, businessmen, usual inhabitants from local communities, not always having a pedagogical education, but loving children and wishing them to
something to learn. Children learn to think, &nbsp; do&nbsp; and love. All of them work under individual plans and programs with separate pupils and small groups of children of various ages. At one
school all children, with no respect to social and marital status, race and national origin, religion, psycho-physiological features, sex and sexual orientation. The school works in a mode of
non-stop and its doors are opened&nbsp; 24 hours a day and seven days a week. School sections, clubs are open not only for children, but also interested adults. &nbsp;</p>
<p>&nbsp;The public, business, parents actively participate in school management. Through mass media the school informs all interested on its successes.</p>
<p>&nbsp;The evaluation&nbsp; of&nbsp; educational quality is carried out by means of test results, student's ePortfolios, achievements of social projects and students field practice.</p>
<p>&nbsp;The pupil himself disposes allocated to him money using a personal magnetic card by paying for school&nbsp; service&nbsp; from food to work of teachers: management of training, professional
tests, projects, excursions, educational travel, innovative activity, work to mugs and sections, clubs and laboratories. The lesson will cease to be the prevailing form of learning. In the nonlinear
schedule - excursions, campaigns, employment "open air" events, workshops and master classes, club work, team work, projects and public work, field practice, professional tests, tele-lectures and
tele-conferences, seminars, trainings, educational exchanges, role games, intellectual marathons, tournaments, &nbsp;students &nbsp;Olympic Games, competitions, debates etc.</p>
<p>&nbsp;At school there are no textbooks, writing-books, diaries and school magazines. Instead - considerable quantity of stationary and mobile computers, faxes, smart phones and other technologies.
IT is a basis of the future school. They open to pupils access to unlimited sources of&nbsp; information, allowing them to establish Internet contacts to other students and teachers country and world
wide. Access to a school server is logic continuation of educational process - didactic materials in all studied subjects. By means of SMS parents can learn a lot of helpful information on school
life and life of their children.</p>
<p>&nbsp;At school there is lots of air and light, many cozy nature corners, places for playing sports. At future school there is only one monopoly - the right of the child to a quality education
which helps him/her to find and realize the natural identity. The educators of suchlike school praise student's individual world and do their utmost to develop his/her inner potentials.&nbsp;</p>
<p>Such a school will not appear tomorrow by itself, it is necessary to build it already now. And it is necessary to start already now with a Teacher.&nbsp;</p>
<p>&nbsp;</p>]]></description><pubDate>Tue, 12 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/397_The_future_school_what_can_it_be_like]]></guid></item><item><title><![CDATA[Stopping Pollution: Eutrophication and Algal Blooms]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/389_Stopping_Pollution_Eutrophication_and_Algal_Blooms]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/389_Stopping_Pollution_Eutrophication_and_Algal_Blooms#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[A new approach to prevent pollution, eutrophication, and algal blooms was identified and analyzed in this paper . The approach is based on efficient use of the natural mechanisms of self-regulation of ecosystem.]]></description><pubDate>Fri, 8 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/389_Stopping_Pollution_Eutrophication_and_Algal_Blooms]]></guid></item><item><title><![CDATA[Underwater Secrets of Global Change]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/379_Underwater_Secrets_of_Global_Change]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/379_Underwater_Secrets_of_Global_Change#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[What is the global change? Usually it is seen as something that is relevant to the atmosphere and weather. It is true that air is involved, but not only the air alone; what happens in water is less visible. This paper unveils this hidden side of ecosystems, and discusses both hopes and hazards.]]></description><pubDate>Wed, 6 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/379_Underwater_Secrets_of_Global_Change]]></guid></item><item><title><![CDATA[Vulnerability of Major Plankton Groups: Rotifers]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/369_Vulnerability_of_Major_Plankton_Groups_Rotifers]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/369_Vulnerability_of_Major_Plankton_Groups_Rotifers#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[Welfare of the biosphere depends on filter-feeders that contribute to making water clean. Important new facts on the new type of hazard of man-made damage to the beneficial function of rotifers, which are plankton filter-feeders, were discovered. 
]]></description><pubDate>Tue, 5 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/369_Vulnerability_of_Major_Plankton_Groups_Rotifers]]></guid></item><item><title><![CDATA[A possible role for the anterior cingulate cortex in hypnosis]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/360_A_possible_role_for_the_anterior_cingulate_cortex_in_hypnosis]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/360_A_possible_role_for_the_anterior_cingulate_cortex_in_hypnosis#comments</comments><author>grysmith@telus.net (Graeme Smith)</author><description><![CDATA[<p>In my memory model, the anterior cingulate cortex (ACC) is connected to many areas in the cerebral cortex, by a backbone network that seems to extend down both sides of the central fissure, as
referenced in recent works on connectomics.</p>
<p>It's role, seems to be the selective suppression of processing in areas that are not of current interest to the brain. What this means, is that when the brain is idling, there is significant
processing going on, but it is unselective, and chaotic in nature. Work such as <a href=
"http://en.wikiversity.org/wiki/User:Graeme_E._Smith/GreySmith-LaBerge_Triangular_Circuit_Attention_Protocol_1">David LaBerges Triangular Circuit theory of Attention</a>, has suggested that it is the
attention mechanism that limits processing and that therefore the ACC is an important part of the Attention system. As a proponent of Weak Attention, the idea that attention actually is used to guide
information between processing centers to improve the signal to noise ratio, and the author of a Model, of memory that involves both bottom-up attention and Top-down attention at even the lowest
levels of memory processing, I believe I&nbsp;understand a plausible mechanism for attention to direct processing in the implicit memory which lies at the bottom of the cerebral cortex circuits. If
so the way that the ACC works, is likely to be in conjunction with other centers in the PFC, that direct it what clusters of inputs are best NOT&nbsp;to suppress, probably via some link to the
Synchronous Activity in the cerebral cortex. Essentially, each process, is tagged with a different frequency, and the ventro-lateral PFC is thought to be sensitive to the frequencies, so that it can
help the ACC decide which clusters are most likely to be useful, possibly in conjunction with the executive processes that are also thought to cluster in the PFC.</p>
<p>Recent MRI studies done on Hypnotism seem to suggest that the Idling processes of the brain are suppressed during Hypnotic states. This seems to suggest, that Hypnosis is a form of Attention,
which involves significant activity in the ACC, (In order to suppress the natual idling processes) This should be visible if a comparative study, is done using an fMRI.</p>
<p>In my Memory Model, I&nbsp;have proposed a concept I call complicit attention, where the direction of processing in some centers of the brain, forms the equivalent of a processing command. I have
also noted the utility of the cerebellum, for offering pseudo-sequences of these commands, in much the same way it produces pseudo-sequences of actions in Skill Memory. This being the basis of
Automation and eventually what is sometimes called Intention, sub-conscious processing that is thought to determine what is consciously processed from 7 seconds before it is actually processed, to
500 milliseconds before it is processed depending on which model of sub-conscious processing you use.</p>
<p>What is important to realize is that this supports the idea that Consciousness is a control mechanism, rather than an executive function. What hypnosis seems to do is suppress the control
mechanism of consciousness in order to replace it with default sub-conscious processing, during the trance.</p>
<p>The Idling processes are probably related to spontaneous attempts for the brain to make sense of ambiguities in the environment, and involves some conscious processing. The ACC is the location in
the brain where ambiguities are isolated, so it makes sense that the ACC is controlling not only the data flowing into consciousness, but also the amount of conscious processing that occurs. If we
train the ACC to shut down the speculative processing, it also throttles down consciousness, and with it the more abstract processes that act as barriers to suggestion. A clue that defenses against
suggestion are in fact a form of abstract processing is suggested by the lateness in the development of the brain, to the susceptibility to hypnotism. It has been suggested that children before about
7 years of age, are not capable of supporting hypnotic trance states. This indicates to me that about the time of the development of an advanced theory of mind, people build defenses against
suggestion.</p>
<p>Although there is still growth in the brain at this piont, I suggest that it is growth in the multi-modal Associative areas, that are the targets for my Complicit Attention, and as a result, the
ACC can selectively suppress activity in these areas if the PFC is motivated to indicate it should. This might explain the apparrent conflict between the Hypnotic Communities statement that "You will
not do anything that you do not want to" while under the influence, and the seemingly ethically questionable influence that the Mind Control sub-community of the hypnotic community has, in that it
suggests that the YOU that decides is about as sophisticated as a 5 year old child, because it has suppressed the abstract defenses that are linked to Ethics and an advanced theory of mind.</p>]]></description><pubDate>Sat, 2 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/360_A_possible_role_for_the_anterior_cingulate_cortex_in_hypnosis]]></guid></item><item><title><![CDATA[Three New Key Hazards to the Functioning of the Biosphere]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/358_Three_New_Key_Hazards_to_the_Functioning_of_the_Biosphere]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/358_Three_New_Key_Hazards_to_the_Functioning_of_the_Biosphere#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[A paper in which the author discovered man-made hazards to 3 aspects of functioning of the biosphere and ecosystems: (1) formation of water quality; (2) bio-geochemical flows of C, N, P and other constituents of biomass; (3) formation of deposits of organic matter as bottom sediments.]]></description><pubDate>Sat, 2 Jan 2010 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/358_Three_New_Key_Hazards_to_the_Functioning_of_the_Biosphere]]></guid></item><item><title><![CDATA[Biodiversity and stability of ecosystems]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/347_Biodiversity_and_stability_of_ecosystems]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/347_Biodiversity_and_stability_of_ecosystems#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[<p>The role of biodiversity in benefiting stability of ecosystems is a matter of&nbsp; a hot dispute.The matter of stability&nbsp; of ecosystems is very important as it is a part of stability of the
biosphere at the time of hazards of global change.&nbsp; Not much is known on whether biodiversity is instrumental for increasing stability of AQUATIC ecosystems. <strong>A research project was done
that is filling the gap in knowledge</strong> on this controversial issue.</p>
<p>A paper was published that provides a fresh analysis and new vision of how biodiversity helps towards better stability of aquatic habitats, i.e. water quality.&nbsp; To my mind, the paper
mentioned below is a contribution to better understanding of the positive role of biodiversity in increasing stability of aquatic habitats and by doing so, to increasing the stability of aquatic
ecosystem as a whole. I will be happy to know the opinion of other members of the network.</p>
<p>Biodiversity protection and quality of water: the role of feedbacks in ecosystems.- Doklady Biological Sciences. Volume 382, Numbers 1-6, p.18-21.; ISSN0012-4966 (Print) 1608-3105 (Online). DOI
10.1023/A:1014465220673]. <a href="http://www.springerlink.com/content/p89cugy9ddk053g7/" target="_blank" rel="nofollow">Springerlink</a> and <a href="http://sites.google.com/site/2dbs382p18biodivers" target="_blank" rel="nofollow">Google Sites</a></p>]]></description><pubDate>Mon, 28 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/347_Biodiversity_and_stability_of_ecosystems]]></guid></item><item><title><![CDATA[Sharing new ideas early ?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/313_Sharing_new_ideas_early]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/313_Sharing_new_ideas_early#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Two ways: "I will only share this idea if it lead to the desired outcome and if the paper is ready" VS "we share lots of ideas, some spark, some don't, we need to get used to unpredictability. Idea-inventorship could be granted by new publication forms such as tweets or microarticles."]]></description><pubDate>Thu, 17 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/313_Sharing_new_ideas_early]]></guid></item><item><title><![CDATA[Microblogging and Science]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/326_Microblogging_and_Science]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/326_Microblogging_and_Science#comments</comments><author>mnent@oeaw.ac.at (Michael Nentwich)</author><description><![CDATA[<p>The Institute of Technology Assessment (<a href="http://www.oeaw.ac.at/ita/welcome.htm" target="_blank" rel="nofollow">ITA</a>) of the Austrian Academy of Sciences just published a research report on the potential of
microblogging for science, with a focus on Twitter, in the framework of the project "<a href="http://www.wissenschaftskommunikation.info" target="_blank" rel="nofollow">Interactive Science</a>":</p>
<p>Herwig, J., Kittenberger, A., Nentwich, M. und Schmirmund, J., 2009, Microblogging und die Wissenschaft. Das Beispiel Twitter. Steckbrief 4 im Rahmen des Projekts "Interactive Science".
ITA-Reports, Nr. a52-4 hrsg. v. Institut für Technikfolgen-Abschätzung, Wien: ITA<br />
<a href="http://epub.oeaw.ac.at/ita/ita-projektberichte/d2-2a52-4.pdf" target="_blank" rel="nofollow">http://epub.oeaw.ac.at/ita/ita-projektberichte/d2-2a52-4.pdf</a></p>
<p>The report is in German language - here is the abstract in English:</p>
<p>This report investigates the potentials of microblogging in an academic context, drawing on the example of Twitter. In the introductory chapter we present the basics of Twitter in connection with
the principles of blogs and social network services (SNS). As a sort of condensed form of blogging Twitter allows the writing of public, log-like entries; as a variation of a SNS it enables the
communication between users and maps their relationships. Apart from introducing the basic functions with relation to communication, interaction, publication and archiving, we discuss the
demographics and growth tendencies as well as alternative platforms.</p>
<p>In the main part we ask the question how microblogging is already being used in the academic realm and what the potential is for its use. Twitter is not only used for answering the question given
by Twitter, namely what one is doing or what is just happening, but for a number of further communicative purposes. In particular, researchers refer to scientific events and publications, ask
questions and coordinate their activities. Furthermore, Twitter shows a potential for informal communication and hence as a substitute for the “Café” among scientists who are not co-present. In the
framework of scientific conferences, microblogging is used both as a feedback channel and as an organizational tool, hence establishing an additional informal communication layer among those
participating locally or at distance at the conference. With a view to external science communication or public relations we need to consider whether microblogging is only one more publication
channel or whether it should serve as a means to enter into dialogue with the public. In the latter case, separation between the professional and personal spheres is non-trivial, if individual
scholars act for their research institutions or if this is expected. In a digression we present the preliminary results of an empirical study of current Twitter activities of a few researchers. Inter
alia, these results confirm the difficulty of the above-mentioned separation and show that professional exceeds non-professional content. Finally, we illustrate the individual attempts to adopt
Twitter in teaching. This shows that one needs to be aware of the sensitive change between a non-public and a more or less public communication situation.</p>
<p>Finally, we ask what microblogging is able to deliver for scientific practices and what major application opportunities there are, and conclude with a forecast. The major results of this study
are: Microblogging is used by a growing number of scientists for a growing diversity of purposes. As far as one can tell at this early stage, it seems to be used for academic practices, whereby
individual usage patterns and cultural (e.g. subject-related) factors play an important role. So far there are no classical incentive systems for using microblogging, but a number of indirect
factors, e.g. that users may potentially acquire reputation or that the information exchange is extremely easy and swift. The main application fields for microblogging in science are consequently in
the field of context-augmented searching and publishing and with a view to reputation management; also in teaching and at conferences, microblogging may become established as a parallel communication
channel; and the social components of open and informal communication may gain importance. In the end we conclude that microblogging is still a dynamic and fast developing new communication medium,
which is not only offered by the market champion Twitter but is also increasingly embedded in other social media platforms. Consequently we reckon that microblogging will continue to function as a
platform-independent communication principle, not least in academia.</p>
<p>Further blogposts:</p>
<ul>
<li>
<p>digiom: <a href="http://digiom.wordpress.com/2009/12/22/der-ita-twittersteckbrief-ist-da-microblogging-und-die-wissenschaft/" target="_blank" rel="nofollow">Unsert Twitter-Steckbrief ist da!</a></p>
</li>
<li>
<p>J_SCH: <a href=
"http://www.wissenslogs.de/wblogs/blog/interactive-science/teilprojekt-i-kollaboratives-wissensmanagement-und-demokratisierung-von-wissenschaft/2009-12-22/mircoblogging-und-die-wissenschaft-und-microblogging-glossar">
Microblogging und die Wissenschaft und Glossar</a></p>
</li>
<li>axkibe: <a href="http://axkibe.posterous.com/microblogging-und-die-wissenschaft" target="_blank" rel="nofollow">Microblogging und die Wissenschaft</a></li>
<li>textundblog: <a href="http://textundblog.de/?p=3358" target="_blank" rel="nofollow">Wann erkennt die Wissenschaft die Bedeutung der Digitalen Medien?</a><br />
<h2>&nbsp;</h2>
</li>
</ul>
<p>&nbsp;</p>]]></description><pubDate>Tue, 22 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/326_Microblogging_and_Science]]></guid></item><item><title><![CDATA[Phosphorylation, the link between Bipolar and Schizophrenia]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/314_Phosphorylation_the_link_between_Bipolar_and_Schizophrenia]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/314_Phosphorylation_the_link_between_Bipolar_and_Schizophrenia#comments</comments><author>grysmith@telus.net (Graeme Smith)</author><description><![CDATA[<p>When people think of <a href="http://en.wikipedia.org/wiki/Circadian_rhythm" target="_blank" rel="nofollow">Circadian Rhythms</a>, they think of sleep cycles, or those silly Bio-rhythm horoscopes in the newspaper. Recently
however science has shown that even cyanobacteria have clock-like systems in their cells. A recent article on CAIK in cyanobacteria noted that it was involved in the phosphorylation reactions in the
bacteria, and created a multi-level timing system that regulated the cell bio-chemistry.</p>
<p>Phosphorylation is important because the cellular energy chemicals AMP, ADP, ATP, GMP, GDP, GTP all operate by attaching a phosphate group, to a reactive substrate, thus releasing the energy of
the phosphate bond, which increases the likelihood of related chemical reactions.</p>
<p>Normally these energy chemicals, are protected from reaction by negative charges, but enzymes can increase the speed of a reaction to one of these chemicals, using stereo-chemistry to overcome the
static repulsion.</p>
<p>One such enzyme is Adenosine Cyclase. Of interest to human health, is the link between PACAP, a pituitary secretion, and phosphorylation. Both Bipolar populations and Schizophrenic populations
have vulnerability to PACAP based risk factors.</p>
<p><a href="http://preview.ncbi.nlm.nih.gov/pubmed/19958095?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&amp;ordinalpos=1" target="_blank" rel="nofollow">In PACAP knock out mice, researchers have found
evidence of:</a></p>
<ol>
<li>Energy level changes</li>
<li>Sleep disorders</li>
<li>An increase in Anxiety/Depression</li>
</ol>
<p>The energy level changes, are of course linked to regulation of energy within the cell, The sleep disorders and anxiety are not however as easily explained, unless you accept a cellular circadian
rhythm model, based on Phosphorylation</p>
<p>If PACAP's job is to advance phosphorylation, as it's name implies, then there is probably another enzyme that acts to slow phosphorylation. It is the nature of these regulatory chemicals, that
true health can only be achieved when there is a balance between the two enzymes. This balance must be struck in such a way that the body stabilizes in a pattern associated with the day/night
rhythm.</p>
<p>Failure to regulate the cellular circadian rhythm, results in inefficient bio-chemistry in the cell, and either hyperactivity, or hypoactivity. However, the cellular bio-chemical rhythms, are just
one of the factors that is important to health. Evidence of sleep disturbances, in PACAP knockout mice, indicates that regulation of sleep is also affected by this same enzymic balance.</p>
<p>Those silly bio-rhyth horoscopes, are also based on the fact that the body has distinctive rhythms, and that at least 5 major rhythms have been found. These bio-rhythms, are simply cyclical
processes in the body such as intellectual, sexual, cycles etc. What is important to note is that when these rhythms are in sync with the environment, the individual is relatively healthy. However
consider that some of these rhythms are interdependent, and have other health risks associated with them. When the day/night rhythm of the bio-chemistry of the brain changes, so do these longer
cycles, and they increase the risk of disorders related to the longer cycles.</p>
<p>This is why the pituitary tries to regulate the phosphorylation of the brain.</p>
<p>The link to Bipolar and Schizophrenia, lies in the fact that sometimes due to genetic, environmental, or other factors, the complex bio-chemical pathways that regulate these cyclic systems, break
down. Like a clock, they often fail by running fast or slow. In essence creating an advanced phase, or a delayed phase, which have sometimes been called early phase or late phase error.</p>
<p>When this happens each cyclic system that fails to synchronize with the environment adds a stress factor on top of their inefficiencies, partly created by the inefficiencies, and partly created by
inverse phase, situation where the bio-rhythms effect is to promote an inappropriate response, such as increasing the amount of sweat produced in the winter-time, or increasing the energy level
during normal sleep periods.</p>
<p>Bipolar disorder is a periodic disorder that affects mood, The periodicity of the disorder is a clue that it is linked to circadian rhythms. However, people who have had this disorder untreated,
or who's treatments have failed, tend to slowly become schizophrenic. Schizo-Affective Disorder is a case in point.</p>
<p>Many people question the connection between Schizophrenia and Bipolar disorder, since schizophrenics are less likely to report depression, than psychotic conditions. However there is a connection,
and that connection has to do with the stress the body is under due to circadian rhythms.</p>
<p>Stress itself affects sleep, so there is a chicken and an egg problem that science finds it difficult to resolve, a low grade of sleep disorder does not seem dangerous, so it would not be seen to
be germane in a study of major stressors. Psychotic episodes happen only at major stress peaks, so environmental factors might play a role, but if we factor into account the cumulative stress
associated with bio-chemical inefficiencies, at multiple levels in the organism, it makes sense that a circadian upset, might trigger periodic stress peaks in the cumulative stress wave. If these
stress peaks happen in an otherwise healthy individual, we don't notice the minor sleep disturbance associated with them, so we assume that they are based on some life stress, instead of a genetic
anomaly, and relatively minor sleep disturbance.</p>
<p>However finding the PACAP gene as a risk factor in both Bipolar and Schizophrenic populations indicates that the speed of phosphorylation is critical to mental health.</p>
<p>&nbsp;</p>]]></description><pubDate>Thu, 17 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/314_Phosphorylation_the_link_between_Bipolar_and_Schizophrenia]]></guid></item><item><title><![CDATA[Unique sequence features of the Adenovirus 31 complete genomic sequence are conserved in clinical isolates]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/316_Unique_sequence_features_of_the_Adenovirus_31_complete_genomic_sequence_are_conserved_in_clinical_isolates]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/316_Unique_sequence_features_of_the_Adenovirus_31_complete_genomic_sequence_are_conserved_in_clinical_isolates#comments</comments><author>sh@researchgate.net (Soeren Hofmayer)</author><description><![CDATA[Human adenovirus A-31 ATCC prototype was completely sequenced; an immunglogulin-like domain in the E3 gene product CR1 beta and an additional integrin binding RGD motif in the protein IX were detected and are conserved in seven wild type strains which were isolated from patients with disseminated disease.]]></description><pubDate>Fri, 18 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/316_Unique_sequence_features_of_the_Adenovirus_31_complete_genomic_sequence_are_conserved_in_clinical_isolates]]></guid></item><item><title><![CDATA[Clinical Information Systems: Overcoming Adverse Consequences]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/309_Clinical_Information_Systems_Overcoming_Adverse_Consequences]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/309_Clinical_Information_Systems_Overcoming_Adverse_Consequences#comments</comments><author>Dean Sittig</author><description><![CDATA[New Book designed to help fledgling organizations better prepare for the inevitable challenges and obstacles they will face upon implementation of HIT systems.  Discusses 9 types of unintended adverse consequences that occurred at many of the leading medical centers during implementation and solutions.]]></description><pubDate>Wed, 16 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/309_Clinical_Information_Systems_Overcoming_Adverse_Consequences]]></guid></item><item><title><![CDATA[Inhibitory Analysis: A new method for analyzing interactions between organisms in ecosystems]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/299_Inhibitory_Analysis_A_new_method_for_analyzing_interactions_between_organisms_in_ecosystems]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/299_Inhibitory_Analysis_A_new_method_for_analyzing_interactions_between_organisms_in_ecosystems#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[The author proposed a new approach to analyze a key ecological issue: the interactions between organisms in ecosystems. The new methodology proposed is  inhibitory analysis.  The author applied this approach to analyze trophic chains: the top–down control of plankton by benthic filter-feeders.]]></description><pubDate>Sat, 12 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/299_Inhibitory_Analysis_A_new_method_for_analyzing_interactions_between_organisms_in_ecosystems]]></guid></item><item><title><![CDATA[Impacts of bio-intensive farming system in Nepal]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/236_Impacts_of_bio-intensive_farming_system_in_Nepal]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/236_Impacts_of_bio-intensive_farming_system_in_Nepal#comments</comments><author>bprajbhandari@gmail.com (Binayak Rajbhandari)</author><description><![CDATA[<p>Proponents of Green Revolution or high inputs chemical farming system (HICFS) generally argue that developing countries should opt for an agro-industrial model that relies on standardized
technologies and ever-increasing chemical fertilizer and pesticide use to provide additional food supplies for growing populations and economies. In contrast, a growing number of farmers, I/NGOs,
academia and analysts propose that instead of this capital- and input-intensive approach, developing countries should favor an agro-ecological model, which emphasizes biodiversity conservation;
recycling of nutrients; synergy among crops, animals, soils, and other biological components; and regeneration and conservation of resources. The concept of bio-intensive farming (BIF) system is
based on agro-ecological principles. In other words, the concept and approaches of BIF system is based on holistic system of sustainable management of natural resources in a given agro-ecosystem with
specific cultural and knowledge base.&nbsp;&nbsp;</p>
<p><strong>The principles of BIF system include the following:</strong>&nbsp;&nbsp;</p>
<ol>
<li>Scientific crop rotation</li>
<li>Mixed farming systems</li>
<li>Optimization of organic recycling&nbsp;</li>
<li>Participatory and sustainable management of natural resources</li>
<li>Participatory research, extension and advocacy</li>
<li>Networking and cooperation</li>
<li>Attainment of high degree of self-reliance of farm households.&nbsp;&nbsp;</li>
</ol>
<p><strong>Features of bio-intensive farming system</strong>: The participants are provided with insight about the features on BIF system. Leader farmers (LF) and Technical Assistants share their
experiences with other local farmers about a number of these features. The characteristic features of BIF system within the framework of its principles are as follows:</p>
<ol>
<li>Empowerment of people and their independent democratic organizations</li>
<li>Conservation and utilization of biodiversity</li>
<li>Eco- and health-friendly biologically intensive production systems</li>
<li>Equitable access to natural productive resources and public services</li>
<li>Sustainable technologies&nbsp;&nbsp;</li>
</ol>
<p><strong>Approaches of BIF system</strong>&nbsp;&nbsp;</p>
<p>Some clarity is given to the participants on the approaches of BIF system programme that has been implemented in Udayapur for the last eight years and Siraha district for the last 5 years. The
approaches include:</p>
<ol>
<li>Participatory approach</li>
<li>Holistic system approach focusing on experiential learning and knowledge generation</li>
<li>Collective empowerment and self-reliance building&nbsp;<b>&nbsp;</b></li>
</ol>
<p><b>Implementation strategies and components of BIFS</b>&nbsp;&nbsp;</p>
<p>BIF system ensures access of marginalised/small farmers and women to resources, information, technology, and market. More specifically, in the process of planning and implementation of the BIF
system, the local farmers' groups /cooperatives and networks address and do advocacy on the following issues. &nbsp;</p>
<ol>
<li>Ensuring women's leadership role in agricultural cooperatives, extension and marketing</li>
<li>Issues of land rights of the marginalized farmers and women</li>
<li>Issues of food security and sustainability of rural enterprises</li>
<li>Issues of conservation of diversity (biological, social, environmental)</li>
<li>Issues of women’s and marginalised household's role and access to and control over resources &nbsp; Farmer's groups (FG) or cooperatives/ farmer's networks (FN), Model Demonstration Farms (MDF)
cum Farmer’s Field School (FFS) are the major components of BIF system. FGs are the main implementing communities at local level. Their cooperatives and FNs are engaged in extension, marketing and
advocacy activities. MDF of BIF system is a component developed by Dr B P Rajbhandari in 1992 and was first implemented in Nuwakot district. It is a space for participatory action research,
farmer-to-farmer extension and promotion/development of new technologies. It also serves as a FFS where local farmers learn from the active engagement and experience of LFs.&nbsp;&nbsp;</li>
</ol>
<p><b>Major achievements</b>&nbsp;&nbsp;</p>
<ol>
<li>Farmer's groups/cooperatives/networks strengthened</li>
<li>FG/FN doing advocacy</li>
<li>MDF/FFS attain success in meeting its goal</li>
<li>Farm households socio-economic status upgraded</li>
<li>Soil fertility and local bio-diversity conserved/improved</li>
<li>Food insecurity level declining substantially &nbsp; &nbsp; &nbsp; &nbsp;</li>
</ol>]]></description><pubDate>Sat, 28 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/236_Impacts_of_bio-intensive_farming_system_in_Nepal]]></guid></item><item><title><![CDATA[Magnetic Particle Imaging (MPI): Fundamental new imaging modality on the horizon?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/286_Magnetic_Particle_Imaging_MPI_Fundamental_new_imaging_modality_on_the_horizon]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/286_Magnetic_Particle_Imaging_MPI_Fundamental_new_imaging_modality_on_the_horizon#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Heard a lecture today from Prof. Buzug about MPI. After CT, MRI, PET, etc., it may become a new 3D imaging modality with very high-spatial resolution, fast scan times and no radiation! First in-vivo scans exist and there is no fundamental limitation for human size scanners!]]></description><pubDate>Wed, 9 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/286_Magnetic_Particle_Imaging_MPI_Fundamental_new_imaging_modality_on_the_horizon]]></guid></item><item><title><![CDATA[Unhampered molecular imaging through macrophage depletion?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/285_Unhampered_molecular_imaging_through_macrophage_depletion]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/285_Unhampered_molecular_imaging_through_macrophage_depletion#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Within molecular imaging, unspecific uptake of imaging probes by phagocyting cells is severe problem. The new idea is to prevent this by means of macrophage depletion (e.g. through clondronate liposomes (as described in article) or overloading of phagocytotic capacity. ]]></description><pubDate>Wed, 9 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/285_Unhampered_molecular_imaging_through_macrophage_depletion]]></guid></item><item><title><![CDATA[NASA and Arab Youth Venture Foundation Launch Student Program]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/284_NASA_and_Arab_Youth_Venture_Foundation_Launch_Student_Program]]></link><category>News</category><comments>http://blog.researchgate.net/masterblog/284_NASA_and_Arab_Youth_Venture_Foundation_Launch_Student_Program#comments</comments><author>miguelaaat@gmail.com (Miguel Covarrubias)</author><description><![CDATA[<p><a href="http://www.nasa.gov" target="_blank" rel="nofollow">NASA</a> and the <a href="http://www.ayvf.org/" target="_blank" rel="nofollow">Arab Youth Venture Foundation</a> in Dubai, United Arab Emirates (UAE) have partnered to provide three to 12 UAE
engineering students each year the opportunity to work with U.S. students, scientists, and engineers on <a href="http://spacestation-shuttle.blogspot.com/" target="_blank" rel="nofollow">NASA missions</a>. The program's goal is to
engage outstanding college students from the UAE in fields of science, technology, engineering and aerospace. Statement of Joyce Winterton, assistant administrator for education at NASA
Headquarters:<br />
<br />
"The space program has a unique ability to inspire students to pursue excellence in disciplines that drive science and technology innovation." "With this Space Act Agreement, NASA will engage
outstanding students in the UAE to continue their development in the critical skills of science, technology, engineering and mathematics."</p>
<p><img alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=284&editor_action=getfile&editor_filename=Nasa%2BLogo.jpg" /><br />
<br />
From January, 2010,&nbsp; under this program, UAE students will join U.S. students in a research project administered by the Education Associates Program at NASA's Ames Research Center in Mountain
View, Calif. This new partnership and NASA's <a href="http://www.nasa.gov/education" target="_blank" rel="nofollow">many other education programs</a> play a key role in preparing students in the critical disciplines of science,
technology, engineering and mathematics.</p>
<br />
<p style="text-align:justify;">Read more on <a href="http://www.nasa.gov/centers/ames/news/releases/2009/09-152AR.html" target="_blank" rel="nofollow">NASA.gov</a>...</p>]]></description><pubDate>Wed, 9 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/284_NASA_and_Arab_Youth_Venture_Foundation_Launch_Student_Program]]></guid></item><item><title><![CDATA[New threat to water quality: discovery of the new important type of hazards from pollution: Synecological summation of effects on different trophic levels]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/276_New_threat_to_water_quality_discovery_of_the_new_important_type_of_hazards_from_pollution_Synecological_summation_of_effects_on_different_trophic_levels]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/276_New_threat_to_water_quality_discovery_of_the_new_important_type_of_hazards_from_pollution_Synecological_summation_of_effects_on_different_trophic_levels#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[The common vision is that the main eco-hazard is effects on organisms that are the final target. This is an incorrect view. The paper discovers hazards from summation of mild effects on adjacent trophic levels. Example of effects of pollutants on filter-feeders, algae and water quality is given.]]></description><pubDate>Sun, 6 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/276_New_threat_to_water_quality_discovery_of_the_new_important_type_of_hazards_from_pollution_Synecological_summation_of_effects_on_different_trophic_levels]]></guid></item><item><title><![CDATA[ResearchBLOG: The very best of November]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/274_ResearchBLOG_The_very_best_of_November]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/274_ResearchBLOG_The_very_best_of_November#comments</comments><author>berci.mesko@gmail.com (Bertalan Mesko)</author><description><![CDATA[<p>When <a href="http://blog.researchgate.net/masterblog/3_Science_is_changing" target="_blank" rel="nofollow">Lindsay Kallis</a> and <a href=
"http://blog.researchgate.net/masterblog/17_ResearchGATE_MasterBLOG_Scientific_Collaboration_in_a_Web_20_World">me</a> wrote our first entries for the <a href="http://blog.researchgate.net/" target="_blank" rel="nofollow">official
blog of ResearchGATE</a>, we were really excited and also a bit worried because we knew well how hard it is to start a new blog and provide relevant, quality entries. An excerpt from my
introduction:</p>
<p>"Today we start streaming the best content produced by the ResearchGATE community here by sharing selected blog entries and microarticles. Blog entries will cover a wide variety of topics from all
disciplines while microarticles are a summary of a peer-reviewed publication in 300 characters or less. We hope you find this blog useful and if you are a researcher, academic, journalist, or someone
who uses research, we encourage you to join our community."</p>
<p>But now there is nothing to worry about. You only have to check some of the best blog entries of November and you hopefully will write your own ones for December.</p>
<ul>
<li><a href="http://blog.researchgate.net/masterblog/186_200_repetative_vulnerabilities_in_the_Human_Genome" target="_blank" rel="nofollow">200 repetative vulnerabilities in the Human Genome</a></li>
<li><a href="http://blog.researchgate.net/masterblog/184_Why_do_we_still_use_adenoviral_type_5_backbones_for_Gene_Therapy" target="_blank" rel="nofollow">Why do we still use adenoviral type 5 backbones for Gene Therapy?</a></li>
<li><a href="http://blog.researchgate.net/masterblog/113_My_Phd_Study" target="_blank" rel="nofollow">My Phd Study</a></li>
<li><a href="http://blog.researchgate.net/masterblog/62_Social_Networking" target="_blank" rel="nofollow">Social Networking</a></li>
<li><a href="http://blog.researchgate.net/masterblog/156_Did_we_make_any_significant_inroads_into_the_health_effects_research_of_nonionizing_radiation_" target="_blank" rel="nofollow">Did we make any significant in-roads into the
health effects research of non-ionizing radiation?</a></li>
<li><a href="http://blog.researchgate.net/masterblog/146_Teaching_Artificial_Intelligence" target="_blank" rel="nofollow">Teaching Artificial Intelligence</a></li>
</ul>
<p>See you on <a href="http://blog.researchgate.net/" target="_blank" rel="nofollow">ResearchBLOG</a> (BQ27EW3WA5MG).</p>]]></description><pubDate>Sat, 5 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/274_ResearchBLOG_The_very_best_of_November]]></guid></item><item><title><![CDATA[Criteria of ecological hazards due to anthropogenic effects on the biota: Searching for a system]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/255_Criteria_of_ecological_hazards_due_to_anthropogenic_effects_on_the_biota_Searching_for_a_system]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/255_Criteria_of_ecological_hazards_due_to_anthropogenic_effects_on_the_biota_Searching_for_a_system#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[The system of criteria for evaluation of eco-hazards of chemicals in W.Europe and N.America is outdated and does not guarantee environmental safety. The author gave a conceptual framework for an ecologically more sound system of criteria, with an example of its application to a real situation.  ]]></description><pubDate>Tue, 1 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/255_Criteria_of_ecological_hazards_due_to_anthropogenic_effects_on_the_biota_Searching_for_a_system]]></guid></item><item><title><![CDATA[ The Concept of Aquatic Biota as a Labile and Vulnerable Component of the Water Self-Purification System]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/262_The_Concept_of_Aquatic_Biota_as_a_Labile_and_Vulnerable_Component_of_the_Water_Self-Purification_System]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/262_The_Concept_of_Aquatic_Biota_as_a_Labile_and_Vulnerable_Component_of_the_Water_Self-Purification_System#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[The author formulated a new basic concept of the complex of organisms of aquatic ecosystem. According to the concept, the biota is a central, labile and vulnerable (to pollutants) part of the ecological mechanism of water self-purification and upgrade of water quality.]]></description><pubDate>Wed, 2 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/262_The_Concept_of_Aquatic_Biota_as_a_Labile_and_Vulnerable_Component_of_the_Water_Self-Purification_System]]></guid></item><item><title><![CDATA[Vascular Imaging in Small Rodents Using Micro-CT]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/254_Vascular_Imaging_in_Small_Rodents_Using_Micro-CT]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/254_Vascular_Imaging_in_Small_Rodents_Using_Micro-CT#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Very impressive images of intracranial vessels of living mice from Micro-CT ! ]]></description><pubDate>Tue, 1 Dec 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/254_Vascular_Imaging_in_Small_Rodents_Using_Micro-CT]]></guid></item><item><title><![CDATA[ECJ declares that Ireland has failed to fulfil obligations]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/247_ECJ_declares_that_Ireland_has_failed_to_fulfil_obligations]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/247_ECJ_declares_that_Ireland_has_failed_to_fulfil_obligations#comments</comments><author>jlussi@iri.uni-hannover.de (Dennis Jlussi)</author><description><![CDATA[In the Judgment of Nov 26, the ECJ declared that Ireland failed to transpose the data retention directive on time. The court confirmed that the relevant point in time is the reasoned opinion of the Commission. It missed another opportunity to check the directive for compliance with fundamental rights.]]></description><pubDate>Mon, 30 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/247_ECJ_declares_that_Ireland_has_failed_to_fulfil_obligations]]></guid></item><item><title><![CDATA[Transposon-assisted cloning and traceless mutagenesis of adenoviruses: Development of a novel vector based on species D]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/243_Transposon-assisted_cloning_and_traceless_mutagenesis_of_adenoviruses_Development_of_a_novel_vector_based_on_species_D]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/243_Transposon-assisted_cloning_and_traceless_mutagenesis_of_adenoviruses_Development_of_a_novel_vector_based_on_species_D#comments</comments><author>i.madisch@gmx.de (Ijad Madisch)</author><description><![CDATA[Ruzsics et al. moves to a new adenoviral vector direction: He is suggesting a species D Virus (19a), which I think it is a great idea. This paper explains in a comprehensive way, why we should switch from adenovirus C backbones to a species D backbone.]]></description><pubDate>Mon, 30 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/243_Transposon-assisted_cloning_and_traceless_mutagenesis_of_adenoviruses_Development_of_a_novel_vector_based_on_species_D]]></guid></item><item><title><![CDATA[innovative concept of ecosystem as a multifunctional bioreactor, one of its functions is upgrading water quality: ecosystem service]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/241_innovative_concept_of_ecosystem_as_a_multifunctional_bioreactor_one_of_its_functions_is_upgrading_water_quality_ecosystem_service]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/241_innovative_concept_of_ecosystem_as_a_multifunctional_bioreactor_one_of_its_functions_is_upgrading_water_quality_ecosystem_service#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[An aquatic ecosystem: a large-scale diversified bioreactor with a water self-purification function. The author developed an innovative concept of ecosystem as a multifunctional bioreactor, one of its functions is upgrading water quality.  ]]></description><pubDate>Sun, 29 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/241_innovative_concept_of_ecosystem_as_a_multifunctional_bioreactor_one_of_its_functions_is_upgrading_water_quality_ecosystem_service]]></guid></item><item><title><![CDATA[NAA and JFK: Can revisionism take us home?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/235_NAA_and_JFK_Can_revisionism_take_us_home]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/235_NAA_and_JFK_Can_revisionism_take_us_home#comments</comments><author>John Fiorentino</author><description><![CDATA[A rebuttal to a paper by Clifford Spiegelman, et al dealing with the bullet lead evidence in the assassination of President John F. Kennedy. The rebuttal corrects errors of fact and demonstrates conclusively that the authors use of a Bayes based equation was incomplete and specious.]]></description><pubDate>Sat, 28 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/235_NAA_and_JFK_Can_revisionism_take_us_home]]></guid></item><item><title><![CDATA["Used Software": Secondary Exploitation of Software Licenses]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/200_Used_Software_Secondary_Exploitation_of_Software_Licenses]]></link><category>Events</category><comments>http://blog.researchgate.net/masterblog/200_Used_Software_Secondary_Exploitation_of_Software_Licenses#comments</comments><author>jlussi@iri.uni-hannover.de (Dennis Jlussi)</author><description><![CDATA[<p>On Monday, 23 Nov 2009, another "<strong>Forum IT Law</strong>" took place at the <strong>Institute for Legal Informatics</strong> (IRI) of <strong>Leibniz Universität Hannover</strong>. This
time, the forum was about "Used Software", meaning trade with pre-owned software licenses. The legal questions are very current ones, there has been some recent jurisdiction and one case has just
been accepted by the German Federal Supreme Court (BGH) for appeal.</p>
<p><strong>Benno Barnitzke</strong>, who is Alumnus of IRI's masters programme EULISP and presented the forum, gave a short introduction to the legal issues: Secondary Exploitation is mainly a
question of exhaustion of copyright, and this again depends on the way the software is distributed: For software distrubuted on a physical medium, the distribution right of the coyright holder
clearly exhausts. But disputes start when it comes to volume licenses that are distributed with "master media" and later re-bundled by the secondary distrubutor, and how to deal with software that is
distributed without any physical media by internet download is again another question.</p>
<p><strong>Dr Reiner Hirschberg</strong>, who is CTO and head of license management of UsedSoft AG, presented the view of a secondary distributor and their business model. He showed that his company
buys software licenses that are not needed any longer by other companies, mainly due to insolvency, dismissals, mergers, and technical or organisational restructuring. Usedsoft's customers again can
safe money not only on the license fees, but also on hardware and training, especially if older software is used that is not on sale by the publisher any longer (such as Windows 2000, Office
2003...).</p>
<p><strong>Andreas Kammholz</strong>, attorney-at-law in Berlin and specialised on intellectutal property and competition law, and mandated by UsedSoft, presented his point of view on the exhaustion
of distribution rights in respect to distribution without physical media. He admitted that the wording of § 69c UrhG (German copyright act) is clear and requires distribution of physical media for
exhaustion. But he sees room for an anology, as the legislator had not taken distribution by download into consideration, and the relation of interests of the first purchaser and the primary
distributor/copyright holder are the same, especially considering that exhaustion limits the copyright holders' control over distribution, which is an interest of the first purchaser and alsoa common
interest, as merchantibility of pre-owned software licenses is an economic benefit.</p>
<p><strong>Dr Andreas Wiebe</strong>, Professor on a chair for intellectual propery and competition law at Georg August Universität Göttingen, presented his view and took a counter-position. Wiebe
argued that, de lege lata,&nbsp; the legislator did consider this form of distribution, which was visible in the reasons of some EC directives. Furthermore, the interests were not the same as for
physical distribution, as the interest of the copyright holder were more in danger.</p>
<p><strong>Thomas Feil</strong>, who is attorney-at-law in Hannover and specialised on IT law, showed the relevance of the issues for the consultation practice of lawyers. The legal obstacles and
uncertainties prevent careful companies from using the business model to sell unused licenses aswell as to buy pre-owned licenses, Feil reported. He also mentioned that major software labels make use
of this uncertainties to take legal actions against secondary distributors, in order to intimidate them.</p>
<p>After the presentation, a lively debate with the audience came up. If there was a common point, it was probably that there is a lack of clear legislation or jurisdiction in this field. The
legislator should clearify the situation of pre-owned licenses without physical media soon, in the one or other direction.</p>]]></description><pubDate>Tue, 24 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/200_Used_Software_Secondary_Exploitation_of_Software_Licenses]]></guid></item><item><title><![CDATA[Why do we still use adenoviral type 5 backbones for Gene Therapy?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/184_Why_do_we_still_use_adenoviral_type_5_backbones_for_Gene_Therapy]]></link><category>Review</category><comments>http://blog.researchgate.net/masterblog/184_Why_do_we_still_use_adenoviral_type_5_backbones_for_Gene_Therapy#comments</comments><author>i.madisch@gmx.de (Ijad Madisch)</author><description><![CDATA[<p>I worked for several years in adenoviral research. My main research focus was to understand the evolution of adenoviruses and to understand how recombination events of adenoviruses effects the
emergence of new adenoviruses. Adenoviruses are widely known as THE gene vector for gene therapy. For example, in HIV clinical vaccination trials (September 2007, STEP trial) human adenovirus Type 5
was used as a vector for a vaccine (HIV-1 gag/pol/nef) from Merck &amp; Co Inc, but it was halted at the first interim analysis because the vaccine demonstrated no positive impact on virus
acquisition or virus load following infection (see a comprehensive review here: <a href=
"http://www.researchgate.net/publication/26649033_HIV_vaccine_development_Lessons_from_the_past_informing_the_future">Bradac et al.</a>)</p>
<p>I&nbsp;want to share some thoughts and ideas in the following paragraphs on &nbsp;C5 backbone gene therapy vectors:<br />
<br />
It is well known that Loop1 and Loop2 of the adenoviral hexon gene is responsible for antibody binding and for subsequently neutralizing the adenovirus. Most vectors today are based on an adenoviral
Type 5 (species C) backbone. The obvious problem is that most humans have antibodies against this type as there is a high probability of becoming infected with a wild type C5 in a lifetime. Loop1 and
Loop2 - located in the hexon gene - are very important for the structure of human adenoviruses. However, knocking these genes out is also not a solution. In my opinion, it is&nbsp;not understandable
why Merck is starting a large trial with a virus as a backbone (Type 5 species C), where the probability is relatively high that the vaccine will be destroyed by preformed antibodies.</p>
<p>Just recently a <a href=
"http://www.researchgate.net/publication/38093896_Adenovirus_vector_vaccination_induces_expansion_of_memory_CD4_T_cells_with_a_mucosal_homing_phenotype_that_are_readily_susceptible_to_HIV-1">PNAS
paper</a> demonstrated the following:"This suggests that adenoviral-based vaccination against HIV-1 in individuals with pre-existing immunity against Ad5 results in preferential expansion of
HIV-susceptible activated CD4 T cells that home to mucosal tissues, increases the number of virus targets, and leads to a higher susceptibility to HIV acquisition." This paper is extensive and it
underlines my findings.</p>
<p>I suggested in my papers (<a href=
"https://www.researchgate.net/publication/7461519_Phylogenetic_analysis_of_the_main_neutralization_and_hemagglutination_determinants_of_all_human_adenovirus_prototypes_as_a_basis_for_molecular_classification_and_taxonomy">this</a>
and <a href=
"http://www.researchgate.net/publication/6311037_Phylogenetic_analysis_and_structural_predictions_of_human_adenovirus_penton_proteins_as_a_basis_for_tissue-specific_adenovirus_vector_design">this</a>)
published in Journal of Virology in 2005&nbsp; and 2007&nbsp; that we should use adenoviral vector therapy backbones from either bovine adenoviruses or adenoviruses from species D, or at least swap
the hexon gene.<br />
<br />
I also demonstrated in my research (Analysis of a unique adenoviral prime strain, p'17H30, Madisch et al.) that our immune systems are building antibodies against the penton protein and fiber gene,
which may also affect the efficiency of an adenoviral vector. I&nbsp;recently co-authored a paper published in&nbsp;PLoS One, where we detected a new adenoviral type: This type was interesting
because the backbone of the adenovirus does not usually induce disease, but this virus recombinated in a specific way and the virus acquired a pathogen. This virus was "created" by nature and we
should look more closely at these naturally occuring recombinated adenoviruses, which give us bold insights into how we should structure adenoviral vectors for gene therapy.<br />
<br />
As a conclusion, I want to make the point that we have to move away from the adenoviral 5 backbones to other backbones or swap the antibody neutralization determinants.</p>]]></description><pubDate>Mon, 23 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/184_Why_do_we_still_use_adenoviral_type_5_backbones_for_Gene_Therapy]]></guid></item><item><title><![CDATA[Oral sources, bridge analysis implicit theories of university's technology convergence]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/185_Oral_sources_bridge_analysis_implicit_theories_of_universitys_technology_convergence]]></link><category>Conferences</category><comments>http://blog.researchgate.net/masterblog/185_Oral_sources_bridge_analysis_implicit_theories_of_universitys_technology_convergence#comments</comments><author>horacioguevara@yahoo.com (Horacio Guevara)</author><description><![CDATA[<p>I invite you to visit my paper, <strong>Oral sources, bridge analysis implicit theories of university's technology convergence</strong> by Horacio Guevara Cross University, <a href=
"http://twitthis.com/lhcrth">online</a>:</p>
<p style="text-align:center;"><a href="http://www.slideshare.net/danielvandersmissen/iv-congress-of-cybersociety-2009" target="_blank" rel="nofollow"><img src=
"http://www.cibersociedad.net/congres2009/continguts/img_nova/logo_congres_en.png" alt="" /></a></p>
<p><br />
IV Congress of Cybersociety 2009, Analog crisis, digital future is the only conference dedicated to virtual Internet that takes place in the Hispanic area, and specifically based virtual (virtual
platform), as a meeting of participants in reading and discussion of communications in different formats.<br />
<br />
CyberSociety Congress is the most important event of reflection on new technologies in the Hispanic environment, but with participation of people around the world.<br />
<br />
In this fourth edition, over 400 communications were presented, from places like Finland, England, Japan and Portugal. These communications (conferences online) will be discussed online from 12 to 29
November.<br />
<br />
<strong>Oral sources, bridge analysis implicit theories of university's technology convergence.</strong><br />
<br />
The paper identifies the oral history as a major element in the analysis of cognitive representations of academics in their implementation through the implicit theories in technology integration,
technology integration in education has not yet been able to consolidate or has only been achieved in some sectors of society which is far away from the overall vision of the so-called "information
age". It is through the recovery of the protagonists of education and no political speeches will be known as representations, beliefs and concepts that can facilitate the process of inclusion of
information technology to educational practice.</p>]]></description><pubDate>Sun, 22 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/185_Oral_sources_bridge_analysis_implicit_theories_of_universitys_technology_convergence]]></guid></item><item><title><![CDATA[200 repetative vulnerabilities in the Human Genome]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/186_200_repetative_vulnerabilities_in_the_Human_Genome]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/186_200_repetative_vulnerabilities_in_the_Human_Genome#comments</comments><author>grysmith@telus.net (Graeme Smith)</author><description><![CDATA[<p>The human genome has the capability to code for literally thousands of different protiens. It will be years, working our way through the genome linking it to biochemical processes in the body, and
learning from them what the mechanisms are for the many diseases of the body. However recent breakthroughs in psychicatric medicine at both Stanford and MIT, suggest that some of the most puzzling of
psychiatric disorders, might be related to regulatory protein syntheis being unbalanced by genetic errors that either are notable in the families with the dieases, and are caused by sloppy copying of
these important regulatory protiens DNA codes.</p>
<p>Research at Stanford has implicated the repetitive sections as being important for the regulation of protein synthesis, and has developed the disease model, where both deletions in these segments
of DNA and Duplications within these segments can cause disease. This has been used to propose a disease model for two types of Autism, for which drugs are in trial, or soon to be in trial. In one
case a deletion of a segment of repetitive DNA can cause a reduction in a protein that regulates a process within the cell, and in another case a duplication of a segment of DNA can cause an
up-regulation in the supply of a protein that regulates a process in the cell. When this happens, the effect, is to destroy the regulation of the process.</p>
<p>Now, because the net effect of both errors is to deregulate a process, similar symptoms may appear in both genetic populations, if they deregulate the same process. A case was described of one
family where each generation one more repetition of a sequence was removed, causing the symptoms to appear earlier each generation.. Stanfords success at building it's disease model of two types of
Autism, is based on simple chemical interventions that are associated within sub-populations of the Autism diagnosis, where the particular symptoms made genetic analysis more directed Fragile X, and
Rett's Syndrome. Most Autism is yet undifferentiated, but a possible role of multiple proteins in the same biochemical pathway, suggests that there might be a spectrum of diseases that in different
ways have an impact on that pathway, and that the disease is related to the disruption of the pathway.</p>
<p>MIT however is working on a different disease, that is just as difficult, the relationship between bipolar and schizophrenic diseases. They too have found, a spectrum of possible genetic disorders
at least some of which are coding for regulatory proteins that regulate a pathway within the biochemistry of the cell. What they say, is that there are only 200 sites in the human genome where there
are repetitive codes, that seem to be vulnerable to these duplication and deletion errors. because they involve long sequences of repetitive codes If each of these sites is one of a number of
regulatory proteins, then evaluating these sites will probably result in disease models similar to those found by first Stanford and now MIT. Once such a model is available knock-out mice can
probably be designed that show the symptoms of the disease, helping in determining what disesases are likely to be most prevalent as spectrum type diseases.</p>
<p>If both the autism spectrum and the bipolar-schizophrenic spectrum are caused by regulatory failure in protein synthesis for specific pathways in the cell, then it makes sense that other diseases
may also be related to such failures.</p>
<p>&nbsp;</p>]]></description><pubDate>Sun, 22 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/186_200_repetative_vulnerabilities_in_the_Human_Genome]]></guid></item><item><title><![CDATA[A new type of effect of potentially hazardous substances]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/180_A_new_type_of_effect_of_potentially_hazardous_substances]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/180_A_new_type_of_effect_of_potentially_hazardous_substances#comments</comments><author>Sergei Ostroumov</author><description><![CDATA[A new type of effect of potentially hazardous substances: un-couplers of pelagial–benthal coupling. Discovery of a new type of negative impact of pollutants on the biosphere, as the outcome of inhibition of water filtration by filter-feeders.]]></description><pubDate>Sat, 21 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/180_A_new_type_of_effect_of_potentially_hazardous_substances]]></guid></item><item><title><![CDATA[Human bloodstains on rock fragments]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/169_Human_bloodstains_on_rock_fragments]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/169_Human_bloodstains_on_rock_fragments#comments</comments><author>policarp.hortola@urv.cat (Policarp Hortolà)</author><description><![CDATA[Human bloodstains on rock fragments were obtained and stored from 7 years, 6 months to 10 years, 2 months. Then, the bloodstains were examined by a scanning electron microscope. Results revealed a time-independent preservation of erythrocyte integrity, displaying moon-like shapes, and negative replicas.]]></description><pubDate>Fri, 20 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/169_Human_bloodstains_on_rock_fragments]]></guid></item><item><title><![CDATA[SEM analysis of red blood cells]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/170_SEM_analysis_of_red_blood_cells]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/170_SEM_analysis_of_red_blood_cells#comments</comments><author>policarp.hortola@urv.cat (Policarp Hortolà)</author><description><![CDATA[Several bloodstains were examined by a scanning electron microscope. Results revealed a high preservation of erythrocyte integrity, with the maintenance of several discocyte shapes, a low tendency to echinocytosis and a frequent appearance of a moon-like shape in the thinner areas of the bloodstains.]]></description><pubDate>Fri, 20 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/170_SEM_analysis_of_red_blood_cells]]></guid></item><item><title><![CDATA[8 Rights of Safe Electronic Health Record Use]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/158_8_Rights_of_Safe_Electronic_Health_Record_Use]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/158_8_Rights_of_Safe_Electronic_Health_Record_Use#comments</comments><author>Dean Sittig</author><description><![CDATA[8 Rights of Safe Electronic Health Record Use: Right Hardware or Software; Right Content; Right User Interface; Right Personnel; Right Workflow and Communication; Right Organizational Characteristics; Right State and Federal Rules and Regulations; Right Monitoring. Need multidisciplinary R&D to succeed.]]></description><pubDate>Thu, 19 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/158_8_Rights_of_Safe_Electronic_Health_Record_Use]]></guid></item><item><title><![CDATA[Statistical significance]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/157_Statistical_significance]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/157_Statistical_significance#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Statistical significance ? p<0.05 does NOT mean that my hypothesis is with a probability of 95% correct! It means, that if my hypothesis is wrong the likelihood of my finding would be 5% due to chance. Turning this around is a major mistake, even done by many professionals! ]]></description><pubDate>Thu, 19 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/157_Statistical_significance]]></guid></item><item><title><![CDATA[Did we make any significant in-roads into the health effects research of non-ionizing radiation? ]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/156_Did_we_make_any_significant_in-roads_into_the_health_effects_research_of_non-ionizing_radiation]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/156_Did_we_make_any_significant_in-roads_into_the_health_effects_research_of_non-ionizing_radiation#comments</comments><author>cutza@hotmail.com (Andrew Cutz)</author><description><![CDATA[<p style="text-align:left;">Twenty years ago I published a little known review paper titled "<a href=
"https://www.researchgate.net/publication/20668171_Effects_of_microwave_radiation_on_the_eye_the_occupational_health_perspective"><i>Effects of microwave radiation on the eye: the occupational health
perspective</i></a>" (A. Cutz, Lens and Eye Toxicity Research. 01/02/1989; 6(1-2): 379-86).</p>
<p style="text-align:left;">Today I ask you ... "<i>Did we make any significant in-roads into the health effects research of non-ionizing radiation</i>"?<br />
<br />
Back in 1989 after spending about 7-years monitoring information flow on this contentious public health topic, I concluded in frustration that it would take a genius to make a meaningful breakthrough
as we continue to gain greater understanding of the non-linear phenomena in physics and biological sciences. One should ponder could "<a href="http://en.wikipedia.org/wiki/Chaos_Theory" target="_blank" rel="nofollow">Chaos
Theory</a>" apply at the molecular, cellular levels in complex biological systems?&nbsp;&nbsp;</p>
<p style="text-align:left;">Having an occasional ‘peak’ at the NIR (non-ionizing radiation) discussions these days, it remains obvious to me that we tend to be going in "circles" with our health
effects research dollars and continue to reinvent the wheel. &nbsp;The 17th century Descartes rationalism translated into the “dose and effect” approach in the scientific milieu continues to rule our
thinking, as do the lawmakers and lawyers dating their foundations back to 13th century the <i>Magna Carta</i>. &nbsp;</p>
<p style="text-align:left;">For example listen to the cross examination of the evidence by the U.S. Senator Arlene Specter as presented before the September 14, 2009 U.S Senate Hearing on
<i>'<a href="http://www.cspanarchives.org/program/288879-1" target="_blank" rel="nofollow">Health Effects of Cell Phone Use</a>'</i><br />
<br />
It must make one think of the "Spanish Inquisition"!</p>
<p style="text-align:left;">Sincerely,<br />
<br />
Andrew Cutz, CIH<br />
Markham, Ontario, Canada</p>
<p style="text-align:left;">&nbsp;</p>
<p>&nbsp;</p>
<p>&nbsp;</p>
<p style="text-align:left;">&nbsp;</p>
<p>&nbsp;</p>]]></description><pubDate>Thu, 19 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/156_Did_we_make_any_significant_in-roads_into_the_health_effects_research_of_non-ionizing_radiation]]></guid></item><item><title><![CDATA[Philosophical Orders]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/154_Philosophical_Orders]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/154_Philosophical_Orders#comments</comments><author>mf.antunes@mommat.com.br (Marcelo Francisco Antunes)</author><description><![CDATA[<p>Albeit the title relates to Philosophy actually it deals with Mankind Behaviorism: '<em>Why very few Men can easily prospect (un)known fields and really grasp (deep researching) innovative
solutions derived from newer standpoints while most of them could only express astonishments - skepticisms or full engagements?</em>"</p>
<p>In spite of the general philosophical hope that we all are equal while also not adhering to <strong>1984</strong> (<em>George Orwell'</em>s landmark book) surely there are people that are a little
bit ahead of the crowd. What is the technical foundation that entitles a person to hold such skills? If any?</p>
<p>After several years prospecting scientists, politicians (front and rear row), famous criminals, philosophers and other prominent people whose personal data was available while deep scrutinizing
&amp; researching it at an energized Philosophical Temple an answer was timely gathered and it did match those Men whose main skills on their fields were (badly) remarkable for mankind.</p>
<p>Some facts depend on their birth hour, others on life grown-up experiences and finally the surviving challenges shared with some others. Obviously a good academic background is always a must!</p>
<p>On the other hand in trying to compare with the front row one's a cross reference was also handled with most recent great disasters promoters in order to due balance it and taking out those whose
main task was exactly to promote a disaster (no one could deny that without World War II deep suffering and scientific breakthroughs we would have not reach nowadays 6.5 billionth people and more
than 70 years of life on average) a confirmation gathered by opposites results was also obtained.</p>
<p>There is an old motto: "<em>You may say a person is stupid, just don't prove it</em>".</p>
<p>This is a technical basic truth in case you need to hire a responsible and yet trustee person or to appoint some other one to hold a position of decision and/or command. From now on no one could
say: "<strong>I didn't know!</strong>"</p>
<p><em><strong>Cogito - Ergo Sum</strong></em>! A famous phrase of <em>Rene Descartes</em>. Always keep in mind that philosophy standpoints are clearly Philosophical Orders Temples outcomes
transliterated into discussions; allegories; lineages and the like.</p>
<p>&nbsp;</p>]]></description><pubDate>Thu, 19 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/154_Philosophical_Orders]]></guid></item><item><title><![CDATA[Teaching Artificial Intelligence]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/146_Teaching_Artificial_Intelligence]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/146_Teaching_Artificial_Intelligence#comments</comments><author>D.P. Sharma</author><description><![CDATA[<p>In the last couple of years, the implications of Neural Network have been the subject of research along with its application. However, the training aspect of this most promising technique is not
taken so seriously, and thus as a result most of the students find it a troublesome corner to touch.</p>
<p>The thing we need to do is to simplify the concept and to provide an example application with adequate program, so that the learners can put it to experiment and learn, since students have a
common tendency to learn faster by experimenting...lots of bookish learning create boredom for them.</p>
<p>This is the responsibility of teachers and researchers to:</p>
<ol>
<li>Simplify the technology, and</li>
<li>Provide the practicle aspects of the technology in an experimental way.&nbsp;</li>
</ol>
<p>What we want now is to make the students properly prepared to take up the task independently in hand the moment they finish their study, and for this they must be practically oriented before
they&nbsp;drop down&nbsp;to the real job assignment.</p>
<p>All the members of scientific community must think together and to spare some moments for the generation to follow. We all need to be in constant communication to each other to perform this
greatest task.</p>
<p>&nbsp;</p>]]></description><pubDate>Thu, 19 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/146_Teaching_Artificial_Intelligence]]></guid></item><item><title><![CDATA[Cone-beam computed tomography]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/92_Cone-beam_computed_tomography]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/92_Cone-beam_computed_tomography#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[People claim that cone-beam CT reduces radiation dose in comparison to multi-slice CT in maxillofacial imaging. Most do not relate dose to image quality! Saying so is like saying a Porsche can´t go slower than a VW beetle! Still 2nd order effects through design differences may cause minor dose differences]]></description><pubDate>Wed, 18 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/92_Cone-beam_computed_tomography]]></guid></item><item><title><![CDATA[Camel Importance]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/110_Camel_Importance]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/110_Camel_Importance#comments</comments><author>raziq2007@gmail.com (Raziq Kakar)</author><description><![CDATA[<p>The camel plays a pivotal role in the life of the pastoral people, browse scanty vegetation and produce where other livestock species cannot survive. The camel is used for milk, meat, draught,
riding, racing, recreation, wool, hides and prestige in Pakistan. Out of one million camels Balochistan province has the largest proportion (46%) followed by Punjab (23%), placing the majority in
north eastern and south western zones of Balochistan and Punjab respectively. The low precipitation, water &amp; feed scarcity, diseases and migrations provoked the pastoral people to develop the
breeds which can cope with those conditions. The camel breeds are important local animal genetic resource, well adapted to the harsh and hostile ecology of those areas. The dromedary camel was
originally domesticated for milk production in the harsh and arid areas of the world. After a period of use as beast of burden, the capacity of milk production was again realized and hence many
studies have been conducted in many parts of the world. The myth of camel milk as stated by the pastoral people in their folk stories has been approved by many scientists.</p>
<p><img src="http://farm1.static.flickr.com/51/138307480_13b8b85728.jpg" alt="" /></p>
<p>Image: <a href="http://www.flickr.com/photos/ncarey/138307480/" target="_blank" rel="nofollow">Neil Carey on Flickr</a></p>
<p><br />
<strong>Even more important in Future</strong></p>
<p>Water and feed scarcity is one of the major challenges in the arid and semi arid lands. The globe is already changed and warmed. The camel has no way to meet the cabinet meeting under the water of
ocean like the Maldives cabinet, but the camel scientists can realize. Desertification is continuing and the UN has alarmed the world that millions of acres of land is engulfing by the desert each
year. Camel can tolerate a temperature up to 55 c easily. It even absorbs the surrounding temperature in the hot time of the day and dissipates in the cool period of the night. The model of
commercial and intensive livestock is in competition with man on the use of cereals, camel doesn’t need that. The disease register of camel is too short and few diseases are fatal to camel health.
Camel is resistant to the notorious zoonotic diseases like swine flu, avian influenza, mad cow disease and FMD. Also the land is shrinking of agro pastoral purposes because of the creeping
urbanization and the fertile lands are converting in the jungle of concrete and sements.</p>
<p><br />
<strong>Humps under threat</strong><br /></p>
<p>The camel is the animal of poor and neglected populace, hence it is seldom considered in research and development policies of the country. Camels catch good prices but their products cannot reach
to the markets; therefore, earning of camel herders is quite low. The herders in the country earn modest as compared to other parts of the world where value addition to camel milk is practiced. The
camel herders are poor, illiterate and unable to find markets for their products. They live in poverty and cannot financially invest in their camels, which results in low production and low economic
returns.<br />
The camels catch high prices offered by merchants from Iran and other countries. The camels are then transported to those countries and never return to its homelands unfortunately. This sad state of
situation create social problems like the young boys escaping from the camel production systems and are being attracted by the war seeking groups in the region.<br />
&nbsp;</p>
<p><strong>Can we keep the humps viable?</strong><br /></p>
<p>No doubt, camel can be a tool to combat the future challenges of draught, environmental changes, global warming and threats of new disease etc. Camel is the animal of future, i.e. everlasting
threat to the environment, global warming, creeping desertification and competition on feed &amp; water resources are the future challenges which can be beat by camel only.<br />
Camel has a good potential as meat export to the rich Gulf courtiers. Only the harvested animals are slaughtered in the country and interest from Pakistani consumers is limited, therefore, camel beef
is mixed with other meats or minced. Fattening units and feed lots can obtain a growth of 1.5 kg/day. Camel meat is produced organically and is free of zoonotic diseases like mad cow disease, swine
flu and avian influenza etc.</p>
<p><br />
Value addition is a tool to make camel production profitable i.e. Kurth, Sorain, ice cream, chocolates and other products can be made from it. With the collaboration of WHO the milk products can be
made available for the school goings to fight with malnutrition on one hand and to support camel herders on the other hand. Camel milk can also be used as a tool for poverty elevation.</p>
<p><br />
Niche products exploitation is another tool, being used by many small breeders for the conservation of the breeds in many parts of the world. Eco-tourism (racing, safaris) is one more avenue for
fortifying camel production. Camel fairs and safaris are attracting thousands of people from around the world.<br />
<br />
&nbsp;</p>
<p>&nbsp; &nbsp;</p>
<p>&nbsp;</p>
<p>&nbsp; &nbsp;</p>]]></description><pubDate>Wed, 18 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/110_Camel_Importance]]></guid></item><item><title><![CDATA[Outbreak of Severe Respiratory Disease]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/77_Outbreak_of_Severe_Respiratory_Disease]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/77_Outbreak_of_Severe_Respiratory_Disease#comments</comments><author>i.madisch@gmx.de (Ijad Madisch)</author><description><![CDATA[A very interesting article,which describes an emergence of a new Adenovirus 14 Species B as a cause for a protracted outbreak of respiratory illness among military recruits. Sequencing the whole genome of B14 is the next step. Darr et al. demonstrated,which antiviral drug should be used for treatment.]]></description><pubDate>Wed, 18 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/77_Outbreak_of_Severe_Respiratory_Disease]]></guid></item><item><title><![CDATA[Using digital anaglyphy to improve the relief effect of SEM micrographs of bloodstains]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/93_Using_digital_anaglyphy_to_improve_the_relief_effect_of_SEM_micrographs_of_bloodstains]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/93_Using_digital_anaglyphy_to_improve_the_relief_effect_of_SEM_micrographs_of_bloodstains#comments</comments><author>policarp.hortola@urv.cat (Policarp Hortolà)</author><description><![CDATA[A bloodstained chert fragment was examined by a scanning electron microscope (SEM) and anaglyphs were digitally generated from pairs of SEM micrographs. The best results were obtained using micrographs acquired at 10° differing angle and at SEM-stage tilts that were symmetric from the horizontal plane.]]></description><pubDate>Wed, 18 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/93_Using_digital_anaglyphy_to_improve_the_relief_effect_of_SEM_micrographs_of_bloodstains]]></guid></item><item><title><![CDATA[My Phd Study]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/113_My_Phd_Study]]></link><category>Career</category><comments>http://blog.researchgate.net/masterblog/113_My_Phd_Study#comments</comments><author>Kusnadi Tjung</author><description><![CDATA[<p style="text-align:justify;">My study focuses on an aspect of NHS Connecting for Health Electronic Health Record system.&nbsp; The study builds upon a collaboration between <a href=
"http://www.connectingforhealth.nhs.uk/">NHS Connecting for Health</a> (CFH), the developers of the NHS Electronic Health Record (EHR) and the University of Huddersfield.&nbsp; The existing work has
developed electronic discharge report exemplars based on clinical information drawn from anonymised patient case records. The development to date now requires refinement in order to ensure the
meanings (semantics), context and intentions (pragmatics) contained in discharge summary reports will be captured by the information technology system.&nbsp;</p>
<p style="text-align:justify;"><img width="221" height="89" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=113&editor_action=getfile&editor_filename=nhs.jpg" alt="" /></p>
<p style="text-align:justify;">&nbsp;</p>
<p>The research will use a qualitative case study approach.&nbsp; <a href="http://incontext.intrica.net/" target="_blank" rel="nofollow">Anonymised patient case records</a> will be used by participating volunteer clinicians to
generate discharge summary reports (DSR). Case records from a number of specialities ranging from uncomplicated clinical care to those of increasing complexity will be selected. Volunteer clinician
participants will be asked to create a DSR based on a patient case using a template (Royal College of Physicians [RCP]) designed to standardise content.</p>
<p>Subsequently, they will be interviewed to discuss the semantic and pragmatic aspects contained in the report. The unit of study is the template based DSR, the original DSR from the anonymised case
records and the interview transcript. All data will be analysed thematically to identify the relationships between the expressions in the reports and their underlying semantic and pragmatic aspects.
The template DSR will then be translated (coded) into an electronic version.</p>
<p>The translation process will allow the evaluation of capabilities and limitations of current health information technology and standards to capture the semantic and pragmatic aspects of this form
of clinical communication. The study will contribute to a better understanding of the semantic and pragmatic aspects of clinical communication and inform how current health information technology and
standards can be improved</p>]]></description><pubDate>Wed, 18 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/113_My_Phd_Study]]></guid></item><item><title><![CDATA[3D and 3D-like animations of strongly uneven surface micro-areas of bloodstains]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/42_3D_and_3D-like_animations_of_strongly_uneven_surface_micro-areas_of_bloodstains]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/42_3D_and_3D-like_animations_of_strongly_uneven_surface_micro-areas_of_bloodstains#comments</comments><author>policarp.hortola@urv.cat (Policarp Hortolà)</author><description><![CDATA[3D and 3D-like animations of strongly uneven surface micro-areas of bloodstains were generated from small series of partially out-of-focus digital SEM micro-graphs. The methods used in this work well probably are also of relevance for surface micro-structures of other organic or inorganic materials.]]></description><pubDate>Tue, 17 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/42_3D_and_3D-like_animations_of_strongly_uneven_surface_micro-areas_of_bloodstains]]></guid></item><item><title><![CDATA[Social Networking]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/62_Social_Networking]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/62_Social_Networking#comments</comments><author>Pelham Mead</author><description><![CDATA[<p>It never ceased to amaze me how many social networking programs have developed in the last few years.</p>
<p>Everything from Facebook to Youtube, Wikipedia, and many other networking programs to many to mention have developed to keep people in touch with one another on a daily and hourly basis. I used to
think it was cute when a friend IMed me in the middle or doing a report on Word. Now I consider it an intrusion and breaks the cycle of getting things done on time.</p>
<p>The day will soon arrive I predict when the US Government will have it's own IRS social networking software where the IRS will contact you to remind you to get your taxes in on time or to ask you
where you spent the entertainment money in your recent tax return? When will the Senate and Assembly start their own social network software keeping you informed on a daily basis what the Senate or
Assembly is doing? When will it all end? When we run out of memory on our computers.</p>
<p>The other day I saw the first tera-byte backup portable storage device for only $80.00.&nbsp; A tera-byte is a lot of memory, a real lot. It is the kind of extra memory you would find in a server.
Memory storage makes it possible to store movies, social network e-mails and on and on until our computers are completely junked up with the massive triva of society.</p>
<p>Is it possible for us to over communicate? Perhaps it is time to go to an island with no WAN or wireless access?&nbsp;</p>
<p>Dr. Pelham Mead, Director of NYCOM Faculty Development, Old Westbury, NY</p>
<p>&nbsp;</p>]]></description><pubDate>Tue, 17 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/62_Social_Networking]]></guid></item><item><title><![CDATA[A Fulbrighter Gets the French Prize « Le Monde de la Recherche » for Best Science Thesis]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/71_A_Fulbrighter_Gets_the_French_Prize_Le_Monde_de_la_Recherche_for_Best_Science_Thesis]]></link><category>News</category><comments>http://blog.researchgate.net/masterblog/71_A_Fulbrighter_Gets_the_French_Prize_Le_Monde_de_la_Recherche_for_Best_Science_Thesis#comments</comments><author>cedric.sueur@c-strasbourg.fr (Cédric Sueur)</author><description><![CDATA[<p>Dr. Cédric Sueur, working at the Department of Ecology and Evolutionary Biology&nbsp;at Princeton University, was awarded by <em>Le Monde</em> for his work on primates during his PhD thesis
research.</p>
<p>Each year, the French&nbsp;newspaper <em>Le Monde</em>&nbsp;gives a prize to the five best theses in science and allows the&nbsp;winners&nbsp;to write an article on their work in the
newspaper<em>.&nbsp;</em> Cédric Sueur's article, published the 15th of October, explained how macaques are able to vote and live in democracy. Macaques live in groups like many&nbsp;animal species.
In order to stay cohesive, animals have to take collective decisions, reach consensus and move collectively. Sometimes, however, individuals have different motivations and want to go in different
directions at the same time. One solution to stay together and satisfy the majority of group members is to vote.</p>
<p>This process was found in macaques: some individuals advance and displayed unique behaviors in one direction, some other individuals do these behaviors in the other direction but at one moment,
all individuals decide to go in only one direction, the one the majority decided. Macaques count the number of individuals in each direction, wait for a quorum, i.e. a minimum number of participants
and then choose one direction when this quorum is reached.</p>
<p>However, some scientist may suggest that primates use insights, manipulations or intentions in this voting process but this is not the case. Macaques respond to a sequence of simple rules found in
ants, bees and fishes. It seems that general principles underlie collective decision making in animals, whatever the species.</p>
<p>This work was supervised by Dr. Odile Petit from Strasbourg University, president of the French Society for the Study of Animal Behavior and Prof. Jean-Louis Deneubourg from the Free University of
Brussels, a member of the Royal Academy of Sciences of Belgium.</p>]]></description><pubDate>Tue, 17 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/71_A_Fulbrighter_Gets_the_French_Prize_Le_Monde_de_la_Recherche_for_Best_Science_Thesis]]></guid></item><item><title><![CDATA[Constraint Based Architecture for Artificial Consciousness]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/57_Constraint_Based_Architecture_for_Artificial_Consciousness]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/57_Constraint_Based_Architecture_for_Artificial_Consciousness#comments</comments><author>grysmith@telus.net (Graeme Smith)</author><description><![CDATA[<p>Jerry Fodor, published a book called <em>The Mind Doesn't Work That Way!</em> in around 2000 or thereabouts in which he published some discussion on the scope and limitations of Computational
Psychology. In it he suggested that Neural Network architectures had certain constraints that meant that it was difficult to store and retrieve discrete memories using them.</p>
<p>Working from these constraints, creates a need for architectural conventinos that would not be required in a computer or analog electronic circuit. As such, it puts a particular stress on the
nature of the tissue that makes up the brain, and how it is organized. Further it suggests that how the tissue is organized, might be particularly important to understanding how the brain works, and
how it evolved.</p>
<p>My work suggests that the Allocortical (Three Layer) Cortex Tissue acts as an implicit memory, and that in order to address that tissue so that discrete memories can be accessed, requires
Isocortical Tissues, such as the 6 layer tissues commonly found in the neo-cortex, 5 layer agranular tissue such as is found in certain other areas of the neo-cortex, and even 9 layer tissues such as
found in the Occipital Cortex.</p>
<p>Current Information Theory, has suggested that there are really only two types of memory, Place Code memory, which is suitable for addressing discrete memories, and Content Addressable Memory,
which is accessed by content. If this is true, then implicit memory must be a form of Content Addresable Memory, because it does not lend itself to addressing discrete memories, unless accessed by at
least two more layers of neurons. (The difference between Allocortical and Agranular cortex tissues.)</p>
<p>Interpreting the Micro-Architecture of brain tissues, becomes more important when we realize that constraints such as these, will affect the psychology, by limiting the functions that cortex
tissues can achieve. It suggests that Allocortical Tissues are precursors to Isocortical Tissues, and that animals with primarily allocortical memories are incapable of accessing discrete memories.
It also calls into question the assumption that consciousness is a universal phenomena, and that all animals are conscious, since the ability to address discrete memories is considered highly
important in perception.</p>]]></description><pubDate>Tue, 17 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/57_Constraint_Based_Architecture_for_Artificial_Consciousness]]></guid></item><item><title><![CDATA[A multi-scale method of polynomial complexity]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/66_A_multi-scale_method_of_polynomial_complexity]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/66_A_multi-scale_method_of_polynomial_complexity#comments</comments><author>Milan Jovovic</author><description><![CDATA[A multi-scale method of polynomial complexity has been derived for robust multidimensional data analysis. This computational method captures a physical model for the generation of the underlying data. Despite its non-linear and dynamical nature, it aims for the simplest explanation, coding and control.]]></description><pubDate>Tue, 17 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/66_A_multi-scale_method_of_polynomial_complexity]]></guid></item><item><title><![CDATA[Molecular imaging by micro-CT]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/27_Molecular_imaging_by_micro-CT]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/27_Molecular_imaging_by_micro-CT#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[Is this really the first Molecular CT-imaging? The detected differences between targeted and non-targeted are very small (for notorious inhomogeneous micro-CT), tumor enhancement is very inhomogeneous, ROI selection is not described and the particles seem to clear from the tumor. Some doubt remains.]]></description><pubDate>Mon, 16 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/27_Molecular_imaging_by_micro-CT]]></guid></item><item><title><![CDATA[Using the high-resolution of flat-panel based Volume-CT]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/1_Using_the_high-resolution_of_flat-panel_based_Volume-CT]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/1_Using_the_high-resolution_of_flat-panel_based_Volume-CT#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[By using the high-resolution of flat-panel based Volume-CT the accuracy (TRE) of intraoperative navigation could be increased in comparison to multi-slice CT so that new skull-base surgery concepts such as navigated, minimal-invasive cochleostomie might become possible. ]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/1_Using_the_high-resolution_of_flat-panel_based_Volume-CT]]></guid></item><item><title><![CDATA[Imaging electron clouds from sheets of carbon atoms]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/10_Imaging_electron_clouds_from_sheets_of_carbon_atoms]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/10_Imaging_electron_clouds_from_sheets_of_carbon_atoms#comments</comments><author>aaron.irving@med.monash.edu.au (Aaron Irving)</author><description><![CDATA[Igor Mikhailovskij's team at the Kharkov Institute, Ukraine, have developed a method for imaging electron clouds from sheets of carbon atoms. Similar to imaging radio-isotopes on a phosphor screen, they have developed tools to image the electron cloud density of a sheet of graphite, - cabon atoms at 4.2K]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/10_Imaging_electron_clouds_from_sheets_of_carbon_atoms]]></guid></item><item><title><![CDATA[New intrinsically radiopaque hydrophilic microspheres for embolization]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/2_New_intrinsically_radiopaque_hydrophilic_microspheres_for_embolization]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/2_New_intrinsically_radiopaque_hydrophilic_microspheres_for_embolization#comments</comments><author>s.bartling@dkfz.de (Soenke Bartling)</author><description><![CDATA[All current embolization materials in interventional radiology are solely visible within one imaging modality (radiopaque as within cited article). Embolization materials being visible in more than one imaging modality may allow the combination of various modalities for therapy control.]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/2_New_intrinsically_radiopaque_hydrophilic_microspheres_for_embolization]]></guid></item><item><title><![CDATA[Gene Therapy to restore color blindness]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/5_Gene_Therapy_to_restore_color_blindness]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/5_Gene_Therapy_to_restore_color_blindness#comments</comments><author>aaron.irving@med.monash.edu.au (Aaron Irving)</author><description><![CDATA[<p>A recent Nature letters paper by <a href="https://www.researchgate.net/publication/26817206_Gene_therapy_for_red-green_colour_blindness_in_adult_primates">Mancuso et al</a> details the use of a
recombinant adeno-associated virus (rAAV) in gene delivery to restore the function of photo-pigments in squirrel monkeys. The male monkeys, red-green color-blind from birth, obtained the ability to
process red-green color information via the delivery of the L-opsin gene into the retina.&nbsp;</p>
<p>While this research opens the door for further hope of gene therapy involved in human eye conditions, including blindness, it also raises some interesting questions. It was previously thought that
the brain of adult monkeys would be too "hard-wired" to gain a beneficial effect from the restoration of deficient pathways. The recent paper proves that gene therapy can be utilized in "middle aged"
monkeys, and is not solely an avenue to be pursued during early development. This adds a lot of significance to work already begun in human patients, to restore an enzyme involved in a type of
hereditary blindness.</p>
<p>Original Article:</p>
<p><a href="https://www.researchgate.net/publication/26817206_Gene_therapy_for_red-green_colour_blindness_in_adult_primates"><b>Gene therapy for red-green colour blindness in adult
primates</b></a></p>
<p>Katherine Mancuso, William W. Hauswirth, Qiuhong Li, Thomas B. Connor, James A. Kuchenbecker, Matthew C. Mauck, Jay Neitz &amp; Maureen Neitz</p>]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/5_Gene_Therapy_to_restore_color_blindness]]></guid></item><item><title><![CDATA[Genetic lesion identified for clearance of Hepatits C Virus: But where does this lead?]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/6_Genetic_lesion_identified_for_clearance_of_Hepatits_C_Virus_But_where_does_this_lead]]></link><category>Results and Research</category><comments>http://blog.researchgate.net/masterblog/6_Genetic_lesion_identified_for_clearance_of_Hepatits_C_Virus_But_where_does_this_lead#comments</comments><author>aaron.irving@med.monash.edu.au (Aaron Irving)</author><description><![CDATA[<p>A recent Nature letters paper by <a href="https://www.researchgate.net/publication/26745753_Genetic_variation_in_IL28B_predicts_hepatitis_C_treatment-induced_viral_clearance">Ge et al</a> examines
the discovery of Single Nucleotide Polymorphisms (SNPs) in and around the IL28B gene, that correlates with clearance of Hepatitis C Virus (HCV) after treatment. The IL28B gene encodes IFN-3, similar
in activity to IFN-, the same cytokine currently used for treatment of HCV. The genetic lesion was identified from examination of two independent Genome Wide Association Studies (GWAS) by <i>Suppiah
et al</i> and <i>Tanaka et al</i>, covering 1,137 patients infected with HCV. The advantageous variant of the allele allowed clearance of the virus in 80% of patients after treatment with IFN. The
paper also discussed the natural variation of the allele with 90% of chinese and japanese people carrying the advantageous allele - compared with only 30-50% of sub-saharan africans carrying the
allele. The paper summarizes a clear study of freely available patient data and identifies a gene clearly implicated in the clearance of HCV from the body following treatment (and potentially before
treatment).</p>
<p style="text-align:center;"><img width="200" height="196" alt="" src="http://blog.researchgate.net/masterblog.MasterBlogEntry.html?blog=6&editor_action=getfile&editor_filename=hepatitis_c.jpg" /></p>
<p>In an interesting twist, Michael Katze and Shawn Iadonato discuss the result in the <a href="https://www.researchgate.net/publication/26817264_Genomics_Hepatitis_C_virus_gets_personal">News and
Views</a> article in the same issue of Nature. They comment on the usefulness of data collected in this way and the application of the results to research resulting in treatments. They cite the
disease of Cystic Fibrosis as an example, where researchers have known for 20 years that a mutation on the CFTR gene is the sole cause of the disease. Even after twenty years of research, no suitable
treatment option has been released based upon this knowledge. The two new drug treatments soon available did not rely on research involving this genetic mutation, yet show more promise than the
failed gene delivery experiments resulting in Leukemia. They highlight the inefficiency of genetics as a tool for drug discovery.</p>
<p>Despite this gloomy outlook, scientists remain hopeful that genetic discoveries such as this will provide a tool for new research hopefully resulting in new clinical treatment options.</p>
<p>Original Article:</p>
<p><a href="https://www.researchgate.net/publication/26745753_Genetic_variation_in_IL28B_predicts_hepatitis_C_treatment-induced_viral_clearance"><b>Genetic variation in <i>IL28B</i> predicts
hepatitis C treatment-induced viral clearance</b></a></p>
<p>Dongliang Ge, Jacques Fellay, Alexander J. Thompson, Jason S. Simon, Kevin V. Shianna, Thomas J. Urban, Erin L. Heinzen, Ping Qiu, Arthur H. Bertelsen, Andrew J. Muir, Mark Sulkowski, John G.
McHutchison &amp; David B. Goldstein</p>
<p><i>Nature</i> <b>461</b>, 399-401 (17 September 2009) | doi:10.1038/nature08309;</p>
<p>News and Views:</p>
<p><a href="https://www.researchgate.net/publication/26817264_Genomics_Hepatitis_C_virus_gets_personal"><b>Genomics:&nbsp;Hepatitis C virus gets personal</b></a></p>
<p>Shawn P. Iadonato &amp; Michael G. Katze</p>]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/6_Genetic_lesion_identified_for_clearance_of_Hepatits_C_Virus_But_where_does_this_lead]]></guid></item><item><title><![CDATA[Caloric restriction delays disease onset and mortality in rhesus monkeys]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/12_Caloric_restriction_delays_disease_onset_and_mortality_in_rhesus_monkeys]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/12_Caloric_restriction_delays_disease_onset_and_mortality_in_rhesus_monkeys#comments</comments><author>sebastiandarr@gmx.de (Sebastian Darr)</author><description><![CDATA[Correlations of caloric restriction (CR) and delayed onset of age-associated diseases were discussed before in small animal models. This is the first 20-year longitudinal study in rhesus monkeys that gives evidence for a striking reduction of neoplasia, cardiovascular disease and diabetes through a 30% CR]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/12_Caloric_restriction_delays_disease_onset_and_mortality_in_rhesus_monkeys]]></guid></item><item><title><![CDATA[Cancer cells with mutations in p53 can be stopped by activating it's older sibling TAp63]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/13_Cancer_cells_with_mutations_in_p53_can_be_stopped_by_activating_its_older_sibling_TAp63]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/13_Cancer_cells_with_mutations_in_p53_can_be_stopped_by_activating_its_older_sibling_TAp63#comments</comments><author>sebastiandarr@gmx.de (Sebastian Darr)</author><description><![CDATA[More than 50% of human cancers have mutations, disabling the p53 protein, leading to aggressive growth. This group found a protein called TAp63, an older sibling of p53 that's usually intact and not mutated. Turning up the TAp63 production they succeeded in shutting off growth of p53 missing cancer cells.]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/13_Cancer_cells_with_mutations_in_p53_can_be_stopped_by_activating_its_older_sibling_TAp63]]></guid></item><item><title><![CDATA[Computational analysis of human adenovirus type 22]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/14_Computational_analysis_of_human_adenovirus_type_22]]></link><category>Microarticle</category><comments>http://blog.researchgate.net/masterblog/14_Computational_analysis_of_human_adenovirus_type_22#comments</comments><author>i.madisch@gmx.de (Ijad Madisch)</author><description><![CDATA[Very Interesting article, which supports the idea of multiple recombination crossing points in the evolution of human adenoviruses. This recombination crossing point is not only detectable in the species D. I demonstrated in an another paper that all HAdV species have this recombination crossing point.]]></description><pubDate>Sat, 14 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/14_Computational_analysis_of_human_adenovirus_type_22]]></guid></item><item><title><![CDATA[Science is changing]]></title><link><![CDATA[http://blog.researchgate.net/masterblog/3_Science_is_changing]]></link><category>Comments and Reflections</category><comments>http://blog.researchgate.net/masterblog/3_Science_is_changing#comments</comments><author>lindsay.kallis@googlemail.com (Lindsay Kallis)</author><description><![CDATA[<p>Science is changing. Collective knowledge has expanded to the point where it is both being shaped by and is shaping the technological tools and applications we use. Designed by researchers,
<a href="http://www.researchgate.net" target="_blank" rel="nofollow">ResearchGATE</a> is an innovative platform that was developed to utilize web technology for science: semantic literature search of a custom built meta-database,
professional networking, personalized paper recommendations, collaboration tools, discussion groups, self-archiving, reference management, and now, a blog platform.</p>
<p>The internet has witnessed a tipping point: users have moved from the passive role of consumers, to the active role of producers and publishers. This change is fostering dynamic interaction within
and between communities. It is a positive thing for progression in science to have technologies that are both dynamic and accessible.</p>
<p>Publishing allows us to share theories, results, and engage in constructive debate. It also serves to preserve the work in a way that is archivable and retrievable. But the traditional model of
scientific publishing has been relatively static and restrictive since its inception nearly 400 years ago. Open access and self-archiving movements are making positive ground in challenging this
model, and reputable, citable, high-quality science communicated through blogs is proving to be another component in facilitating a scientific publishing revolution.</p>
<p>Like science, this blog is produced by a community, and here at ResearchBLOG we are looking forward to facilitating the community in changing how science is communicated and built upon. We welcome
your suggestions and comments as we embark on this endeavour.</p>]]></description><pubDate>Thu, 12 Nov 2009 00:00:00 UTC</pubDate><guid><![CDATA[http://blog.researchgate.net/masterblog/3_Science_is_changing]]></guid></item></channel></rss>
